Skip to content

Commit

Permalink
chore: new version
Browse files Browse the repository at this point in the history
  • Loading branch information
haowang-bioinfo committed Jun 12, 2019
1 parent b9e373c commit 2c3eb56
Show file tree
Hide file tree
Showing 7 changed files with 488,463 additions and 5 deletions.
4 changes: 4 additions & 0 deletions ModelFiles/dependencies.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
MATLAB 9.3.0.713579 (R2017b)
libSBML 5.17.0
RAVEN_toolbox 2.2.1
COBRA_toolbox 3.0.6
Binary file modified ModelFiles/mat/humanGEM.mat
Binary file not shown.
13,521 changes: 13,521 additions & 0 deletions ModelFiles/txt/humanGEM.txt

Large diffs are not rendered by default.

474,933 changes: 474,933 additions & 0 deletions ModelFiles/xml/humanGEM.xml

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions ModelFiles/yml/humanGEM.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@
- metaData:
short_name : "humanGEM"
full_name : "Generic genome-scale metabolic model of Homo sapiens"
version : ""
date : "2019-06-11"
version : "1.1.0"
date : "2019-06-12"
authors : "Jonathan Robinson, Hao Wang, Pierre-Etienne Cholley, Pınar Kocabaş"
email : "[email protected]"
organization: "Chalmers University of Technology"
Expand Down
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -18,14 +18,14 @@ Article under consideration.

- Pubmed ID: n/a

- Last update: {{DATE}}
- Last update: 2019-06-12


- The model contains:

|Taxonomy | Template Model | Reactions | Metabolites| Genes |
| ------------- |:-------------:|:-------------:|:-------------:|-----:|
|_Homo sapiens_ | HMR2, Recon3D| {{nRXN}}| {{nMET}}| {{nGENE}}|
|_Homo sapiens_ | HMR2, Recon3D| 13520| 10103| 3628|



Expand Down
2 changes: 1 addition & 1 deletion version.txt
Original file line number Diff line number Diff line change
@@ -1 +1 @@
1.0.3
1.1.0

0 comments on commit 2c3eb56

Please sign in to comment.