Skip to content

Commit

Permalink
chore: new version
Browse files Browse the repository at this point in the history
  • Loading branch information
edkerk committed Jun 24, 2024
1 parent 9a58fef commit 022ed5c
Show file tree
Hide file tree
Showing 8 changed files with 2,714 additions and 3,780 deletions.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ If you use Mouse1, Rat1, Zebrafish1, Fruitfly1, or Worm1 in your research, pleas

|Taxonomy | Template Model | Reactions | Metabolites| Genes |
| ------------- |:-------------:|:-------------:|:-------------:|:-----:|
|_Homo sapiens_ | HMR2, Recon3D, iHsa| 12995| 8456| 2889|
|_Homo sapiens_ | HMR2, Recon3D, iHsa| 12971| 8455| 2887|


## Contributing
Expand Down
Binary file modified model/Human-GEM.mat
Binary file not shown.
258 changes: 117 additions & 141 deletions model/Human-GEM.txt

Large diffs are not rendered by default.

Binary file modified model/Human-GEM.xlsx
Binary file not shown.
6,226 changes: 2,592 additions & 3,634 deletions model/Human-GEM.xml

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions model/Human-GEM.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@
- metaData:
short_name: "Human-GEM"
full_name: "Generic genome-scale metabolic model of Homo sapiens"
version: ""
date: "2024-06-24"
version: "1.19.0"
date: "2024-06-25"
taxonomy: "9606"
github: "https://github.com/SysBioChalmers/Human-GEM"
description: "Genome-scale metabolic models are valuable tools to study metabolism and provide a scaffold for the integrative analysis of omics data. This is the latest version of Human-GEM, which is a genome-scale metabolic model of a generic human cell. The objective of Human-GEM is to serve as a community model for enabling integrative and mechanistic studies of human metabolism."
Expand Down
2 changes: 1 addition & 1 deletion model/dependencies.txt
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
MATLAB 9.10.0.1602886 (R2021a)
MATLAB 24.1.0.2568132 (R2024a) Update 1
libSBML 5.19.0
RAVEN_toolbox ce973b3
COBRA_toolbox 3.4
2 changes: 1 addition & 1 deletion version.txt
Original file line number Diff line number Diff line change
@@ -1 +1 @@
1.18.0
1.19.0

0 comments on commit 022ed5c

Please sign in to comment.