Fix test fields (#175)

SimVascular · Feb 23, 2024 · 2fd02ed · 2fd02ed
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commit 2fd02ed
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Showing 79 changed files with 346 additions and 1,798 deletions.
diff --git a/tests/cases/cmm/iliac_artery_variable_wall_props/2-inflate/result_003.vtu b/tests/cases/cmm/iliac_artery_variable_wall_props/2-inflate/result_003.vtu
diff --git a/tests/cases/cmm/iliac_artery_variable_wall_props/2-inflate/svFSI.xml b/tests/cases/cmm/iliac_artery_variable_wall_props/2-inflate/svFSI.xml
@@ -33,8 +33,8 @@
 <Add_equation type="CMM" > 
  <Coupled> true </Coupled> 
  <Min_iterations> 3 </Min_iterations> 
- <Max_iterations> 10 </Max_iterations>
- <Tolerance> 1e-7 </Tolerance> 
+ <Max_iterations> 13 </Max_iterations>
+ <Tolerance> 1e-12 </Tolerance>
 
  <Initialize> inflate </Initialize>
  <Poisson_ratio> 0.5 </Poisson_ratio>
@@ -49,7 +49,8 @@
 
  <LS type="CG" >
  <Max_iterations> 500 </Max_iterations>
- <Tolerance> 1e-7 </Tolerance>
+ <Tolerance> 1e-12 </Tolerance>
+ <Krylov_space_dimension> 50 </Krylov_space_dimension>
  </LS>
 
 

diff --git a/tests/cases/cmm/iliac_artery_variable_wall_props/3-inflate-cmm/result_003.vtu b/tests/cases/cmm/iliac_artery_variable_wall_props/3-inflate-cmm/result_003.vtu
diff --git a/tests/cases/cmm/iliac_artery_variable_wall_props/3-inflate-cmm/svFSI.xml b/tests/cases/cmm/iliac_artery_variable_wall_props/3-inflate-cmm/svFSI.xml
@@ -53,8 +53,8 @@
 <Add_equation type="CMM" > 
  <Coupled> true </Coupled> 
  <Min_iterations> 3 </Min_iterations> 
- <Max_iterations> 10 </Max_iterations>
- <Tolerance> 1e-7 </Tolerance> 
+ <Max_iterations> 7 </Max_iterations>
+ <Tolerance> 1e-12 </Tolerance>
 
  <Fluid_density> 1.06 </Fluid_density>
  <Viscosity model="Constant" >
@@ -81,7 +81,7 @@
  <LS type="GMRES" >
  <Preconditioner> FSILS </Preconditioner>
  <Max_iterations> 100 </Max_iterations>
- <Tolerance> 1e-4 </Tolerance>
+ <Tolerance> 1e-12 </Tolerance>
  </LS>
 
 

diff --git a/tests/cases/cmm/pipe_3d/2a-inflate/result_003.vtu b/tests/cases/cmm/pipe_3d/2a-inflate/result_003.vtu
diff --git a/tests/cases/cmm/pipe_3d/2a-inflate/svFSI.xml b/tests/cases/cmm/pipe_3d/2a-inflate/svFSI.xml
@@ -33,7 +33,7 @@
  <Coupled> true </Coupled> 
  <Min_iterations> 3 </Min_iterations> 
  <Max_iterations> 5 </Max_iterations>
- <Tolerance> 1e-6 </Tolerance> 
+ <Tolerance> 1e-12 </Tolerance> 
 
  <Initialize> inflate </Initialize>
  <Poisson_ratio> 0.5 </Poisson_ratio>
@@ -46,7 +46,7 @@
 
  <LS type="CG" >
  <Max_iterations> 500 </Max_iterations>
- <Tolerance> 1e-6 </Tolerance>
+ <Tolerance> 1e-12 </Tolerance>
  </LS>
 
  <Add_BF mesh="wall" > 

diff --git a/tests/cases/cmm/pipe_3d/2b-prestress/result_003.vtu b/tests/cases/cmm/pipe_3d/2b-prestress/result_003.vtu
diff --git a/tests/cases/cmm/pipe_3d/2b-prestress/svFSI.xml b/tests/cases/cmm/pipe_3d/2b-prestress/svFSI.xml
@@ -33,8 +33,8 @@
 <Add_equation type="CMM" > 
  <Coupled> true </Coupled> 
  <Min_iterations> 3 </Min_iterations> 
- <Max_iterations> 5 </Max_iterations>
- <Tolerance> 1e-6 </Tolerance> 
+ <Max_iterations> 30 </Max_iterations>
+ <Tolerance> 1e-12 </Tolerance> 
  <Prestress> true </Prestress>
  <Initialize> prestress </Initialize>
 
@@ -49,7 +49,7 @@
 
  <LS type="GMRES" >
  <Max_iterations> 500 </Max_iterations>
- <Tolerance> 1e-6 </Tolerance>
+ <Tolerance> 1e-12 </Tolerance>
  </LS>
 
  <Add_BF mesh="wall" > 

diff --git a/tests/cases/cmm/pipe_3d/3a-inflate-cmm/result_005.vtu b/tests/cases/cmm/pipe_3d/3a-inflate-cmm/result_005.vtu
diff --git a/tests/cases/cmm/pipe_3d/3a-inflate-cmm/svFSI.xml b/tests/cases/cmm/pipe_3d/3a-inflate-cmm/svFSI.xml
@@ -49,8 +49,8 @@
 <Add_equation type="CMM" > 
  <Coupled> true </Coupled> 
  <Min_iterations> 3 </Min_iterations> 
- <Max_iterations> 10 </Max_iterations>
- <Tolerance> 1e-4 </Tolerance> 
+ <Max_iterations> 20 </Max_iterations>
+ <Tolerance> 1e-12 </Tolerance> 
 
  <Fluid_density> 1.06 </Fluid_density>
  <Viscosity model="Constant" >
@@ -65,13 +65,15 @@
  <Displacement> true </Displacement>
  <Velocity> true </Velocity>
  <Pressure> true</Pressure>
+ <Traction> true </Traction>
  <WSS> true </WSS>
  </Output>
 
  <LS type="GMRES" >
  <Preconditioner> FSILS </Preconditioner>
- <Max_iterations> 100 </Max_iterations>
- <Tolerance> 1e-4 </Tolerance>
+ <Max_iterations> 10 </Max_iterations>
+ <Tolerance> 1e-12 </Tolerance>
+ <Krylov_space_dimension> 50 </Krylov_space_dimension>
  </LS>
 
 

diff --git a/tests/cases/cmm/pipe_3d/3b-prestress-cmm/result_005.vtu b/tests/cases/cmm/pipe_3d/3b-prestress-cmm/result_005.vtu
diff --git a/tests/cases/cmm/pipe_3d/3b-prestress-cmm/svFSI.xml b/tests/cases/cmm/pipe_3d/3b-prestress-cmm/svFSI.xml
@@ -49,8 +49,8 @@
 <Add_equation type="CMM" > 
  <Coupled> true </Coupled> 
  <Min_iterations> 3 </Min_iterations> 
- <Max_iterations> 10 </Max_iterations>
- <Tolerance> 1e-4 </Tolerance> 
+ <Max_iterations> 30 </Max_iterations>
+ <Tolerance> 1e-12 </Tolerance> 
  <!--Prestress> true </Prestress-->
 
  <Fluid_density> 1.06 </Fluid_density>
@@ -67,12 +67,13 @@
  <Velocity> true </Velocity>
  <Pressure> true</Pressure>
  <WSS> true </WSS>
+ <Traction> true</Traction>
  </Output>
 
  <LS type="GMRES" >
  <Preconditioner> FSILS </Preconditioner>
  <Max_iterations> 100 </Max_iterations>
- <Tolerance> 1e-4 </Tolerance>
+ <Tolerance> 1e-12 </Tolerance>
  </LS>
 
 

diff --git a/tests/cases/fluid/carreau_yasuda/result_001.vtu b/tests/cases/fluid/carreau_yasuda/result_001.vtu
diff --git a/tests/cases/fluid/carreau_yasuda/svFSI.xml b/tests/cases/fluid/carreau_yasuda/svFSI.xml
@@ -45,8 +45,8 @@
 
  <Coupled> true </Coupled>
  <Min_iterations> 1 </Min_iterations> 
- <Max_iterations> 10 </Max_iterations> 
- <Tolerance> 1e-7 </Tolerance> 
+ <Max_iterations> 4 </Max_iterations> 
+ <Tolerance> 1e-12 </Tolerance> 
  <Backflow_stabilization_coefficient> 0.2 </Backflow_stabilization_coefficient> 
 
  <Density> 1.06 </Density> 
@@ -60,21 +60,18 @@
  </Viscosity>
 
  <Output type="Spatial" >
- <Velocity> true </Velocity>
- <Pressure> true </Pressure>
- <Traction> true </Traction>
- <WSS> true </WSS>
+ <Velocity> true </Velocity>
+ <Pressure> true </Pressure>
+ <Traction> true </Traction>
+ <Vorticity> true</Vorticity>
+ <Divergence> true</Divergence>
+ <WSS> true </WSS>
  </Output>
 
- <LS type="NS" >
- <Max_iterations> 10 </Max_iterations> 
- <NS_GM_max_iterations> 10 </NS_GM_max_iterations> 
- <NS_CG_max_iterations> 500 </NS_CG_max_iterations> 
- <Tolerance> 1e-5 </Tolerance>
- <NS_GM_tolerance> 1e-5 </NS_GM_tolerance>
- <NS_CG_tolerance> 1e-5 </NS_CG_tolerance> 
- <Absolute_tolerance> 1e-14 </Absolute_tolerance> 
- <Krylov_space_dimension> 50 </Krylov_space_dimension>
+ <LS type="GMRES" >
+ <Preconditioner> FSILS </Preconditioner>
+ <Max_iterations> 100 </Max_iterations>
+ <Tolerance> 1e-12 </Tolerance>
  </LS>
 
  <Add_BC name="lumen_inlet" > 

diff --git a/tests/cases/fluid/casson/result_001.vtu b/tests/cases/fluid/casson/result_001.vtu
diff --git a/tests/cases/fluid/casson/svFSI.xml b/tests/cases/fluid/casson/svFSI.xml
@@ -45,8 +45,8 @@
 
  <Coupled> true </Coupled>
  <Min_iterations> 1 </Min_iterations> 
- <Max_iterations> 10 </Max_iterations> 
- <Tolerance> 1e-7 </Tolerance> 
+ <Max_iterations> 5 </Max_iterations> 
+ <Tolerance> 1e-12 </Tolerance> 
  <Backflow_stabilization_coefficient> 0.2 </Backflow_stabilization_coefficient> 
 
  <Density> 1.06 </Density> 
@@ -58,21 +58,18 @@
  </Viscosity>
 
  <Output type="Spatial" >
- <Velocity> true </Velocity>
- <Pressure> true </Pressure>
- <Traction> true </Traction>
- <WSS> true </WSS>
+ <Velocity> true </Velocity>
+ <Pressure> true </Pressure>
+ <Traction> true </Traction>
+ <Vorticity> true</Vorticity>
+ <Divergence> true</Divergence>
+ <WSS> true </WSS>
  </Output>
 
- <LS type="NS" >
- <Max_iterations> 10 </Max_iterations> 
- <NS_GM_max_iterations> 10 </NS_GM_max_iterations> 
- <NS_CG_max_iterations> 50 </NS_CG_max_iterations> 
- <Tolerance> 1e-5 </Tolerance>
- <NS_GM_tolerance> 1e-5 </NS_GM_tolerance>
- <NS_CG_tolerance> 1e-5 </NS_CG_tolerance> 
- <Absolute_tolerance> 1e-14 </Absolute_tolerance> 
- <Krylov_space_dimension> 50 </Krylov_space_dimension>
+ <LS type="GMRES" >
+ <Preconditioner> FSILS </Preconditioner>
+ <Max_iterations> 100 </Max_iterations>
+ <Tolerance> 1e-12 </Tolerance>
  </LS>
 
  <Add_BC name="lumen_inlet" > 

diff --git a/tests/cases/fluid/driven_cavity_2d/result_002.vtu b/tests/cases/fluid/driven_cavity_2d/result_002.vtu
diff --git a/tests/cases/fluid/driven_cavity_2d/svFSI.xml b/tests/cases/fluid/driven_cavity_2d/svFSI.xml
@@ -48,8 +48,8 @@
 <Add_equation type="fluid" > 
  <Coupled> true </Coupled>
  <Min_iterations> 1 </Min_iterations> 
- <Max_iterations> 10</Max_iterations> 
- <Tolerance> 1e-6 </Tolerance> 
+ <Max_iterations> 7</Max_iterations> 
+ <Tolerance> 1e-12 </Tolerance> 
  <Backflow_stabilization_coefficient> 0.0 </Backflow_stabilization_coefficient> 
 
  <Density> 100 </Density> 
@@ -58,20 +58,22 @@
  </Viscosity>
 
  <Output type="Spatial" >
- <Velocity> true </Velocity>
- <Pressure> true </Pressure>
- <Vorticity> true </Vorticity>
- <Divergence> true </Divergence>
+ <Velocity> true </Velocity>
+ <Pressure> true </Pressure>
+ <Traction> true </Traction>
+ <Vorticity> true</Vorticity>
+ <Divergence> true</Divergence>
+ <WSS> true </WSS>
  </Output>
 
  <Output type="Volume_integral" >
  <Divergence> true </Divergence>
  </Output>
 
  <LS type="GMRES" >
- <Max_iterations> 100 </Max_iterations> 
- <Tolerance> 1e-6 </Tolerance>
- <Krylov_space_dimension> 50 </Krylov_space_dimension>
+ <Preconditioner> FSILS </Preconditioner> 
+ <Max_iterations> 1000 </Max_iterations> 
+ <Tolerance> 1e-12 </Tolerance>
  </LS>
 
  <Add_BC name="left" > 

diff --git a/tests/cases/fluid/dye_AD/result_001.vtu b/tests/cases/fluid/dye_AD/result_001.vtu