v14.1.0

Catalyst v14.1.0

Diff since v14.0.1

Merged pull requests:

• Documentation page on how to access model properties (#889) (@TorkelE)
• Adding cycles/flux mode calculation (#893) (@vyudu)
• Specialised conservation law section on the network analysis doc page (#903) (@TorkelE)
• Tutorial on periodic events (#946) (@TorkelE)
• Expand tests (#973) (@TorkelE)
• Spatial modelling documentation (#976) (@TorkelE)
• Improve conservation law handling in find_identifiable_functions (#984) (@TorkelE)
• More t is now a parameter test (#989) (@TorkelE)
• Fix spatial sim aniamtions in doc (#993) (@TorkelE)
• update video display strategy (#995) (@TorkelE)
• Api update (#997) (@TorkelE)
• Separate conservation law page (#998) (@TorkelE)
• remove bondgraphs from docs and fix SBMLImporter link (#999) (@isaacsas)

Closed issues:

• Project: Qualitative Analysis (#43)
• Register (#127)
• Proposed notation for delay (#191)
• Reaction expression parser (#330)
• Zero order reactions with arrows that disable mass action (#379)
• Deficiency theorem zero applied to the reaction network (#410)
• alias elimination (#413)
• conservation of energy (#424)
• Gillespie simulations on GPU (#543)
• Separate /test/Project.toml environment file (#578)
• Fix Latexify tests (#610)
• fix formatting failures (#653)
• Problem with extend if things are in a specific order (ERROR: type ReactionSystem has no field gui_metadata) (#658)
• broken doc examples due to new Int -> Float64 conversion (#699)
• Spatial Required updates list (#726)
• Reenable formatter CI when fixed (#754)
• Improve documentation of remove_conserved when creating an ODESystem - and make it default to true? (#773)
• remake doesn't recompute conservation law constants (#807)
• Reorganisations/renamings to the docs (#837)
• List of doc update PRs for doc overhaul (#850)
• show in a tutorial how to do periodic events with jumps (#936)
• Add missing model acces functions to API (and add links to it where functions are mentioned) (#990)