Detailed balance #965
Merged
Detailed balance #965
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
This needs to be updated to master. |
|
@vyudu when you have a chance can you update to master? (No rush though as I’m traveling this week as we discussed.) |
|
bump |
|
Sorry about the delay - will be active again in a week or so |
|
This one should be ready for review @isaacsas |
isaacsas
reviewed
Nov 4, 2024
isaacsas
reviewed
Nov 4, 2024
src/network_analysis.jl
Outdated
| if deficiency(rs) > 0 | ||
| rxn_idxs = [edgeindex(D, Graphs.src(e), Graphs.dst(e)) for e in spanning_forest] | ||
| S_F = netstoichmat(rs)[:, rxn_idxs] | ||
| sols = nullspace(S_F) |
There was a problem hiding this comment.
Should this use ModelingToolkit's integer nullspace?
isaacsas
reviewed
Nov 4, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Code and tests for testing whether a reaction networks with a given set of rate parameters is detailed balanced.