modified: Dockerfile

SciLifeLab · Nov 18, 2024 · 5106380 · 5106380
1 parent 8011220
commit 5106380
Showing 1 changed file with 3 additions and 5 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -3,7 +3,7 @@ FROM condaforge/mambaforge:24.9.2-0
 WORKDIR /app
 
 ## Set TIDDIT version
-ARG TIDDIT_VERSION=3.8.0
+ARG TIDDIT_VERSION=3.9.0
 
 ## Add some info
 LABEL base_image="python:3.8-slim"
@@ -12,11 +12,9 @@ LABEL software.version=${TIDDIT_VERSION}
 
 ## Download and extract
 RUN conda install conda-forge::unzip
-RUN conda install -c conda-forge pip
-RUN conda install -c bioconda numpy cython pysam
+RUN conda install -c conda-forge pip gcc joblib
+RUN conda install -c bioconda numpy cython pysam bwa
 
-#RUN pip install numpy cython pysam
-#RUN c
 RUN wget https://github.com/SciLifeLab/TIDDIT/archive/TIDDIT-${TIDDIT_VERSION}.zip && \
     unzip TIDDIT-${TIDDIT_VERSION}.zip && \
     rm TIDDIT-${TIDDIT_VERSION}.zip