The is the GCModeller virtual cell engine, still under the development progress
GCMarkupLanguage: Virtual cell model in XML languageGCTabular: Virtual cell model in excel table file.
GCMarkupLanguage and GCTabular just two kinds of file format for GCModeller simulation engine input. They can convert to each other in a very easy way by using GCModeller model utils app.
the GCModeller vcell dynamics is based on the concept of biological reaction channel
the biological model of the GCModeller vcell is consists with 3 levels:
the biological model in genomics model is consist with one or multiple replicon objects. each replicon object is a model for represents the genome or plasmid DNA. and the genes in a replicon model are group into multiple transcription union unit: operon for co-expression and co-transcription_regulation.