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24 Open 146 Closed
24 Open 146 Closed
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Issues list

Add new background correction function based on dividing the imraw by imbg minor new feature intended for changes that require bumping MINOR version. New features that are backwards-compatible.
#315 opened Sep 25, 2024 by arsalanmstn
1
RuntimeWarning during the processing from get_j/statistics.py: divide by zero encountered in log p = np.polyfit(np.log(dias[ind]), np.log(number_distribution[ind]), 1) bug Something isn't working
#313 opened Sep 25, 2024 by arsalanmstn
1
1
Add more info to error messages in log
#310 opened Sep 22, 2024 by nordam
1
Investigate ncrcat for combining stats files?
#308 opened Sep 20, 2024 by nordam
docstring for SilCamLoad image_format is lowercase, but should be upper case string inputs bug Something isn't working documentation Improvements or additions to documentation
#306 opened Sep 20, 2024 by emlynjdavies
Tell user why the remaining steps are being skipped documentation Improvements or additions to documentation minor new feature intended for changes that require bumping MINOR version. New features that are backwards-compatible.
#304 opened Sep 20, 2024 by nordam
1
Add version information to PyOPIA command line interface documentation Improvements or additions to documentation minor new feature intended for changes that require bumping MINOR version. New features that are backwards-compatible.
#303 opened Sep 20, 2024 by nepstad
1
broken reference link in parallell-processing documentation bug Something isn't working documentation Improvements or additions to documentation
#301 opened Sep 20, 2024 by emlynjdavies
Add PyOPIA reference publication to README and documentation
#300 opened Sep 20, 2024 by nepstad
@nordam
2
Suspected memory leak when processing large datasets with append=false bug Something isn't working
#296 opened Sep 19, 2024 by nordam
1
Move to more flexible image containers for SilCam
#288 opened Sep 18, 2024 by nepstad
misleading error message for empty directory bug Something isn't working
#279 opened Sep 13, 2024 by emlynjdavies
Better handling of occluded particles patch / enhancement improved functionality or patch indented for changes that require bumping only the PATCH number
#240 opened Sep 3, 2024 by nepstad
Add docs/notebooks to test_notebooks testing
#237 opened Sep 3, 2024 by nepstad
Explicit handling of images exceeding concentration limit patch / enhancement improved functionality or patch indented for changes that require bumping only the PATCH number
#226 opened Aug 30, 2024 by nepstad
Consider better packaging of h5 files from exported ROIs major new feature Changes in high-level pipeline use and/or data output that are not backwards-compatible
#209 opened Aug 26, 2024 by emlynjdavies
6
Implement optional stats output format compatible with UVP-ARGO netcdf minor new feature intended for changes that require bumping MINOR version. New features that are backwards-compatible.
#207 opened Aug 26, 2024 by nepstad DTO-BioFlow
@nepstad
2
Consider testing on spherical standards data testing
#200 opened Aug 21, 2024 by emlynjdavies
Consider tests with synthetic data and statistical size distributions testing
#199 opened Aug 21, 2024 by emlynjdavies
Move Classification and ROI export to separate pipeline step major new feature Changes in high-level pipeline use and/or data output that are not backwards-compatible
#170 opened Aug 9, 2024 by nepstad DTO-BioFlow
Make tests for pyopia.cli command line help wanted Extra attention is needed patch / enhancement improved functionality or patch indented for changes that require bumping only the PATCH number priority-high
#142 opened Sep 27, 2023 by emlynjdavies
2
Add padding to ROIs of particles patch / enhancement improved functionality or patch indented for changes that require bumping only the PATCH number priority-high
#135 opened Sep 13, 2023 by animmosmith
@animmosmith
1
Make a method to handle bad images e.g. issue with lighting minor new feature intended for changes that require bumping MINOR version. New features that are backwards-compatible. priority-low
#85 opened Mar 13, 2023 by emlynjdavies
investigate Xarray for the holographic kernel creation and imagestack minor new feature intended for changes that require bumping MINOR version. New features that are backwards-compatible.
#23 opened Nov 6, 2022 by emlynjdavies
1
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