add Dockerfile

Dockerfile

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+# Contains pytorch, torchvision, cuda, cudnn
+FROM nvcr.io/nvidia/pytorch:23.06-py3
+MAINTAINER Pedro M. Gordaliza @petermcgor
+
+#nnUnet is set up by default to look at the following dir. I mantain them for reproducibility
+ARG resources="/opt/nnunet_resources"
+ENV nnUNet_raw=$resources"/nnUNet_raw" nnUNet_preprocessed=$resources"/nnUNet_preprocessed" nnUNet_results=$resources"/nnUNet_results"
+
+#Copy the files. TODO change to git clone https://github.com/PeterMcGor/nnUNet.git  once the repo is tested the repo is tested
+RUN mkdir /nnunet
+WORKDIR /nnunet
+COPY . .
+
+## Install nnunet 
+RUN pip install -e .
+## hiddenlayers for topologies 
+RUN pip install --upgrade git+https://github.com/FabianIsensee/hiddenlayer.git