dff_calc

Simple dF/F calculation for neural calcium traces, based on https://www.nature.com/articles/nprot.2010.169

Usage

1. from dff_calc import dff_calc
2. Coerce your data to be in a (cell x time) 2D numpy array.
3. To calculate the dF/F, call dff = dff_calc(raw_data). Other parameters are listed in the docstring.

Installation

pip install dff-calc

Requirements

Python 3.6+, numpy, pandas, scipy

Licence

Apache 2.0

Authors

dff_calc was written by Hagai Har-Gil, graduate student in Dr. Pablo Blinder's Lab.