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@zhenwu0728
zhenwu0728 committed Oct 8, 2024
1 parent 8605531 commit befaf2d
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130 changes: 68 additions & 62 deletions Manifest.toml
View file
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
# This file is machine-generated - editing it directly is not advised

julia_version = "1.10.4"
julia_version = "1.11.0"
manifest_format = "2.0"
project_hash = "205500b0f1de73c79e59f04986ea5daaceb8538b"
project_hash = "a73a8d7764dc5026b1a2046f8ed34a77d5030cd7"

[[deps.Adapt]]
deps = ["LinearAlgebra", "Requires"]
Expand All @@ -16,10 +16,11 @@ weakdeps = ["StaticArrays"]

[[deps.ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
version = "1.1.1"
version = "1.1.2"

[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
version = "1.11.0"

[[deps.Atomix]]
deps = ["UnsafeAtomics"]
Expand All @@ -29,6 +30,7 @@ version = "0.1.0"

[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
version = "1.11.0"

[[deps.CEnum]]
git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
Expand All @@ -41,17 +43,18 @@ uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "1.1.1+0"

[[deps.ConstructionBase]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98"
git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157"
uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
version = "1.5.6"
version = "1.5.8"

[deps.ConstructionBase.extensions]
ConstructionBaseIntervalSetsExt = "IntervalSets"
ConstructionBaseLinearAlgebraExt = "LinearAlgebra"
ConstructionBaseStaticArraysExt = "StaticArrays"

[deps.ConstructionBase.weakdeps]
IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"

[[deps.DataAPI]]
Expand All @@ -67,6 +70,7 @@ version = "1.0.0"
[[deps.Dates]]
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
version = "1.11.0"

[[deps.Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
Expand All @@ -81,45 +85,51 @@ version = "1.16.3"

[[deps.FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
version = "1.11.0"

[[deps.InteractiveUtils]]
deps = ["Markdown"]
uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
version = "1.11.0"

[[deps.IteratorInterfaceExtensions]]
git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0"

[[deps.JLD2]]
deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"]
git-tree-sha1 = "5fe858cb863e211c6dedc8cce2dc0752d4ab6e2b"
deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
git-tree-sha1 = "aeab5c68eb2cf326619bf71235d8f4561c62fe22"
uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
version = "0.4.50"
version = "0.5.5"

[[deps.JLLWrappers]]
deps = ["Artifacts", "Preferences"]
git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
git-tree-sha1 = "f389674c99bfcde17dc57454011aa44d5a260a40"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.5.0"
version = "1.6.0"

[[deps.KernelAbstractions]]
deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec"
deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"]
git-tree-sha1 = "04e52f596d0871fa3890170fa79cb15e481e4cd8"
uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
version = "0.9.22"
version = "0.9.28"

[deps.KernelAbstractions.extensions]
EnzymeExt = "EnzymeCore"
LinearAlgebraExt = "LinearAlgebra"
SparseArraysExt = "SparseArrays"

[deps.KernelAbstractions.weakdeps]
EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[deps.LLVM]]
deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"]
git-tree-sha1 = "020abd49586480c1be84f57da0017b5d3db73f7c"
git-tree-sha1 = "4ad43cb0a4bb5e5b1506e1d1f48646d7e0c80363"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
version = "8.0.0"
version = "9.1.2"

[deps.LLVM.extensions]
BFloat16sExt = "BFloat16s"
Expand All @@ -129,13 +139,14 @@ version = "8.0.0"

[[deps.LLVMExtra_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
git-tree-sha1 = "c2636c264861edc6d305e6b4d528f09566d24c5e"
git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3"
uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
version = "0.0.30+0"
version = "0.0.34+0"

[[deps.LazyArtifacts]]
deps = ["Artifacts", "Pkg"]
uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
version = "1.11.0"

[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
Expand All @@ -145,16 +156,17 @@ version = "0.6.4"
[[deps.LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
version = "8.4.0+0"
version = "8.6.0+0"

[[deps.LibGit2]]
deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
version = "1.11.0"

[[deps.LibGit2_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"]
uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
version = "1.6.4+0"
version = "1.7.2+0"

[[deps.LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
Expand All @@ -163,13 +175,16 @@ version = "1.11.0+1"

[[deps.Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
version = "1.11.0"

[[deps.LinearAlgebra]]
deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
version = "1.11.0"

[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
version = "1.11.0"

[[deps.MacroTools]]
deps = ["Markdown", "Random"]
Expand All @@ -180,18 +195,20 @@ version = "0.5.13"
[[deps.Markdown]]
deps = ["Base64"]
uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
version = "1.11.0"

[[deps.MbedTLS_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.28.2+1"
version = "2.28.6+0"

[[deps.Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804"
version = "1.11.0"

[[deps.MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
version = "2023.1.10"
version = "2023.12.12"

[[deps.NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
Expand All @@ -200,17 +217,23 @@ version = "1.2.0"
[[deps.OpenBLAS_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
version = "0.3.23+4"
version = "0.3.27+1"

[[deps.OrderedCollections]]
git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.6.3"

[[deps.Pkg]]
deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
version = "1.10.0"
version = "1.11.0"

[deps.Pkg.extensions]
REPLExt = "REPL"

[deps.Pkg.weakdeps]
REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"

[[deps.PrecompileTools]]
deps = ["Preferences"]
Expand All @@ -227,19 +250,12 @@ version = "1.4.3"
[[deps.Printf]]
deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"

[[deps.REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
version = "1.11.0"

[[deps.Random]]
deps = ["SHA"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[deps.Reexport]]
git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.2.2"
version = "1.11.0"

[[deps.Requires]]
deps = ["UUIDs"]
Expand All @@ -253,14 +269,7 @@ version = "0.7.0"

[[deps.Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"

[[deps.Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc"

[[deps.SparseArrays]]
deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
version = "1.10.0"
version = "1.11.0"

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
Expand All @@ -282,9 +291,16 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
version = "1.4.3"

[[deps.Statistics]]
deps = ["LinearAlgebra", "SparseArrays"]
deps = ["LinearAlgebra"]
git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0"
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
version = "1.10.0"
version = "1.11.1"

[deps.Statistics.extensions]
SparseArraysExt = ["SparseArrays"]

[deps.Statistics.weakdeps]
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"

[[deps.StructArrays]]
deps = ["ConstructionBase", "DataAPI", "Tables"]
Expand All @@ -304,11 +320,6 @@ version = "0.6.18"
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"

[[deps.SuiteSparse_jll]]
deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
version = "7.2.1+1"

[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
Expand All @@ -332,23 +343,18 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
version = "1.10.0"

[[deps.TranscodingStreams]]
git-tree-sha1 = "96612ac5365777520c3c5396314c8cf7408f436a"
git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.11.1"

[deps.TranscodingStreams.extensions]
TestExt = ["Test", "Random"]

[deps.TranscodingStreams.weakdeps]
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
version = "0.11.3"

[[deps.UUIDs]]
deps = ["Random", "SHA"]
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
version = "1.11.0"

[[deps.Unicode]]
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
version = "1.11.0"

[[deps.UnsafeAtomics]]
git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278"
Expand All @@ -357,9 +363,9 @@ version = "0.2.1"

[[deps.UnsafeAtomicsLLVM]]
deps = ["LLVM", "UnsafeAtomics"]
git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5"
git-tree-sha1 = "2d17fabcd17e67d7625ce9c531fb9f40b7c42ce4"
uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249"
version = "0.1.5"
version = "0.2.1"

[[deps.Zlib_jll]]
deps = ["Libdl"]
Expand All @@ -369,12 +375,12 @@ version = "1.2.13+1"
[[deps.libblastrampoline_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.8.0+1"
version = "5.11.0+0"

[[deps.nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
version = "1.52.0+1"
version = "1.59.0+0"

[[deps.p7zip_jll]]
deps = ["Artifacts", "Libdl"]
Expand Down
8 changes: 4 additions & 4 deletions Project.toml
View file
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name = "PlanktonIndividuals"
uuid = "dfeb4ede-c75e-11e9-050d-41ab7a730e9e"
authors = ["zhenwu0728 <[email protected]>", "gaelforget <[email protected]>"]
version = "0.7.2"
version = "0.7.3"

[deps]
Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
Expand All @@ -27,9 +27,9 @@ PI_MetalExt = ["Metal", "GPUArrays"]
[compat]
Adapt = "^4"
CUDA = "^4, 5"
Metal = "^1.2"
GPUArrays = "10"
JLD2 = "^0.4"
Metal = "^1"
GPUArrays = "^10"
JLD2 = "^0.5"
KernelAbstractions = "^0.9"
StructArrays = "^0.6"
julia = "^1.7"
Expand Down

2 comments on commit befaf2d

@zhenwu0728
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@JuliaRegistrator register branch=master

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Registration pull request created: JuliaRegistries/General/116831

Tip: Release Notes

Did you know you can add release notes too? Just add markdown formatted text underneath the comment after the text
"Release notes:" and it will be added to the registry PR, and if TagBot is installed it will also be added to the
release that TagBot creates. i.e.

@JuliaRegistrator register

Release notes:

## Breaking changes

- blah

To add them here just re-invoke and the PR will be updated.

Tagging

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v0.7.3 -m "<description of version>" befaf2d1205f83776e8ce615d1071727220fe794
git push origin v0.7.3

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