MIL-NanoRM

A multiple instance learning framework for RNA modification detection in direct RNA sequencing(DRS) IVT data. Model architecture inspired by m6anet

This is a temporary code repository:

1. DeepRead is designed to reach read-level detection and compute loss directly at the read-level with labels available.
2. PseudoNet is specifically designed for psi/m1psi modification detection in IVT RNA data