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Merge from upstream/develop 2024-12-04 #472

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merged 86 commits into from
Dec 4, 2024

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Includes revert of b31dd46.

alalazo and others added 30 commits November 26, 2024 08:14
GROMACS supports HeFFTe with either SYCL or CUDA build and requires
a matching HeFFTe build
)

* gromacs: announce deprecation policy and start to implement

* Style it up

* [@spackbot] updating style on behalf of mabraham

* Bump versions used in CI

---------

Co-authored-by: mabraham <[email protected]>
…pack#47428)

* c/c++ flags should have been modified for all 2023.x.y versions, but
  upper bound was too low
* Fortran flags should have been modified for all 2024.x.y versions, but
  likewise the upper bound was too low
* all-libary: add voronoi support and git version

---------

Co-authored-by: Wouter Deconinck <[email protected]>
* Add version 5.5 in package.py

* Update package.py
…k#47819)

Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.9.0 to 6.10.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@4f58ea7...48aba3b)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Explcitly sets the CMake variables  Faodel_INCLUDE_DIRS and Faodel_LIBRARY_DIRS when +faodel.
This seems to be needed for recent versions of seacas (seacas@2021-04-02:), but should be safe
to do for all versions.

For Faodel_INCLUDE_DIRS, it looks like Faodel has header files under $(Faodel_Prefix)/include/faodel,
but seacas is not including the "faodel" part in #includes.  So add both $(Faodel_Prefix)/include
and $(Foadel_Prefix)/include/faodel

Co-authored-by: payerle <[email protected]>
Signed-off-by: Howard Pritchard <[email protected]>
alalazo and others added 25 commits December 2, 2024 14:14
* libseccomp: python forward compat bound

* include 2.5.5

Co-authored-by: Wouter Deconinck <[email protected]>

---------

Co-authored-by: Wouter Deconinck <[email protected]>
* acts dependencies: new versions as of 2024/11/25

This commit adds a new version of detray and two new versions of vecmem.

* acts dependencies: new versions as of 2024/12/02

This commit adds version 38 of ACTS and a new version of detray.
…k#47882)

Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.3.3 to 8.3.4.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.3...8.3.4)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
the nis module was removed in python 3.13
we had it default to ~nis
no package requires +nis
required dependencies for +nis were missing

so better to remove the nis module entirely.
fixes a build failure due to broken URL and improves nwchem build without internet
* Bump Kokkos and Kokkos-kernels to 4.5.00

* petsc@:3.22 add a conflict with this new version of kokkos

* Update kokkos/kokkos-kernel dependency

---------

Co-authored-by: Satish Balay <[email protected]>
* nim: add latest versions
  In addition:
  - Create separate build and install phases.
  - Remove koch nimble call as it's redundant with koch tools.
  - Install all additional tools bundled with Nim instead of only Nimble.
* Fix 1.6 version
* nim: add devel
  In addition:
  - Fix build accessing user config/cache
* update py-numl and py-nugraph recipes

this commit adds the develop branch as a valid option for each of these two packages. in order to enable this, package tarballs are now retrieved from the github source repository instead of pypi, and their checksums and the build system have been updated accordingly.

* rename versions "develop" -> "main" to be consistent with branch name
…ack#47452)

* add a '+no_warning' variant to metis to prevent prevasive warning
* fix formating

---------

Co-authored-by: Cleveland <[email protected]>
Co-authored-by: mcourtois <[email protected]>
This reverts commit 62884f9.

Superseded by upcoming merge from upstream, see
spack@b31dd46.
@marcmengel marcmengel merged commit e4effb5 into fnal-develop Dec 4, 2024
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