Merge from upstream 2024-10-15 #455
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* [py-flash-attn] Add version 2.6.3 * Update dependencies according to the latest version * Add max_jobs environmental variable to avoid oom error --------- Co-authored-by: aurianer <[email protected]>
* Adding the perl-bio-db-bigfile package * Adding perl-bio-ensembl-variation package * Adding perl-bio-ensembl-io package * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py * Updating dependent package handling Signed-off-by: Teague Sterling <[email protected]> * Updating dependent package handling Signed-off-by: Teague Sterling <[email protected]> * Reverting variants Signed-off-by: Teague Sterling <[email protected]> * Update package.py * Rename package.py to package.py * Update package.py * Update package.py * Update package.py * Fix variant installation and dependencies Signed-off-by: Teague Sterling <[email protected]> * Styles Signed-off-by: Teague Sterling <[email protected]> * Removing unneeded dependencies Signed-off-by: Teague Sterling <[email protected]> * Update package.py * Update package.py * Update package.py * perl-bio-ensembl: update sha256 of 112 * perl-bio-ensembl-variation: add perl-bio-ensembl-funcgen@{vers} --------- Signed-off-by: Teague Sterling <[email protected]> Co-authored-by: Bernhard Kaindl <[email protected]>
* postgresql: Add icu4c dependency for versions 16+ * postgresql: make ICU an option * postgresql: ICU variant only needed for v16+ * postgresql: Check for negated option Check for negated option instead of negating the test Co-authored-by: Alec Scott <[email protected]> --------- Co-authored-by: Alec Scott <[email protected]>
Co-authored-by: Bernhard Kaindl <[email protected]>
…6708) Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.5.0 to 4.6.0. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](codecov/codecov-action@e28ff12...b9fd7d1) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* fds: add 6.9.0,6.9.1 and openmp * typo and style fix
* rclone: convert to a GoPackage * rclone: add v1.68.1
The CMake builder in Spack actually adds incorrect rpaths. They are
unfiltered and incorrectly ordered compared to what the compiler wrapper
adds.
There is no need to specify paths to dependencies in `CMAKE_INSTALL_RPATH`
because of two reasons:
1. CMake preserves "toolchain" rpaths, which includes the rpaths injected
by our compiler wrapper.
2. We use `CMAKE_INSTALL_RPATH_USE_LINK_PATH=ON`, so libraries we link
to are rpath'ed automatically.
However, CMake does not create install rpaths to directories in the package's
own install prefix, so we set `CMAKE_INSTALL_RPATH` to the educated guess
`<prefix>/{lib,lib64}`, but omit dependencies.
Signed-off-by: Massimiliano Culpo <[email protected]>
* libsndfile: add v1.2.2 * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <[email protected]>
* libmodbus: add v3.1.10 * libmodbus: deprecate older versions
* lucene: add v9.12.0, v10.0.0 * [@spackbot] updating style on behalf of wdconinc --------- Co-authored-by: wdconinc <[email protected]>
* Add new version for master branch Added new version for master branch. Also added additional functions to ensure tempo will actually run. Tempo assumes the stage directory sticks around and references numerous files and directory there. That has been corrected here only if using the master version. The LWA-10-2020 version will also have this problem but they may have additional setup in their compute/Spack environment to address this issue already so I did not modify anything when that's the version. Example of what happens in the LWA-10-17-2020 version regarding missing files is given below user@cs:~/spack/bin$ tempo more: cannot open /tempo.hlp: No such file or directory * Updated to fix format errors Flake8 check found errors. Fixed those formatting issues * Additional format change Removed redundant setup_dependent_run_environment missed in previous update * Update url to use https: https is the usual transport and is needed to support checkout behind some firewalls --------- Co-authored-by: Bernhard Kaindl <[email protected]>
Signed-off-by: Massimiliano Culpo <[email protected]>
Remove the `build-tools` tag of python, otherwise these types of
concretizations are possible:
```
py-root
^py-pip
^[email protected]
^[email protected]
```
So, a package would be configured with py-pip using python 3.12, but
installed for 3.13, which does not work.
This commit adds a new version of ACTS, detray, and GeoModel.
gartung
approved these changes
Oct 15, 2024
|
Loading the diff page is really slow. I checked py-tensorflow and it still has the patch I added. |
I applied the merge after your commits of this morning (I think) and the style changes to |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
gcc@14:only (cfftgl: Handle char/unsigned char API change with the update to [email protected] spack/spack#47003)functionality removed from Spack
spack.Targetinlib64path-handlingcode in
lib/spack/spack/util/environment.py