This is our 'AnCir' to the need for a simple-to-use (GUI; no coding) tool for analysis of circadian rhythms. Currently, the tool only allows for import of csv data and plotting of actigrams.
This has been rewritten in Svelte (see previous incarnation at https://github.com/DaveCumin/ancir) to make it more extensible, faster, and fix a bunch of bugs. With help from @korur and @khromov - thank you!
AnCiR should start with some sample data already in the Data section on the left hand side. If you want to generate more sample data, just click on Data>Create and a new Sample set should appear. Similarly, if you have your own .csv file, then you can import it and it should show up in the list.
Clicking on the name of the data table should display the contents in the bottom viewer, so you can see what the data look like
To create an actigram, click on Plot>Actigram. You can change the data that is used by using the dropdown lists under Data for this plot on the right hand panel. You can add multiple data sources and change their colours. To see the post-processed data useed in the plot, click on the hyperlinked data for each source and see it appear in the data tabs below.
The other controls for the actigram should be self-explanatory.
The Periodogram plot is what it says it is, and raw is just a plot of the data - with similar controls to the actigram.
Have fun.
Any advice or offers of support will be welcommed - email [email protected].
The following packages code was used in this project:
- Svelte is used as the framework/library/compiler of the code.
- D3 is used for plotting.
- Papaparse is used for importing the data.
- In-place editing is used for updating items.
- Moment-guess was adapted to guess the time format of data.
- Tooltip was adapted for this project.
- Spinner was taken to use for the spinner.
- Luxon is used for date manipulation and caluclations.