add spec folder to validation testing cell in notebook

specification aggregator.ipynb

@@ -6517,27 +6517,26 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 11,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "C:\\Users\\gtsueng\\Anaconda3\\envs\\outbreak\\lib\\site-packages\\biothings_schema\\schema.py:281: UserWarning: Found multiple namespace prefixes defined in the schema: f['dwc', 'dct', 'bioschemas']\n",
-      "  warnings.warn(f\"Found multiple namespace prefixes defined in the schema: f{namespace_set}\")\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "from biothings_schema import Schema\n",
+    "import os\n",
+    "import json\n",
+    "\n",
+    "script_path = os.getcwd()\n",
+    "parent_path = os.path.dirname(script_path)\n",
+    "repo_path = os.path.join(parent_path,'specifications')\n",
+    "spec_name = 'LabProtocol'\n",
+    "file_name = 'LabProtocol_v0.8-DRAFT.json'\n",
+    "file_path = os.path.join(repo_path,spec_name,'jsonld',file_name)\n",
+    "with open(file_path,'r') as infile:\n",
+    "    url = json.load(infile)\n",
     "\n",
-    "script_path = ''\n",
     "#url = \"https://raw.githubusercontent.com/gtsueng/DDE_bioschemas/main/draft_validations/ProteinStructure_v0.5-DRAFT-2018_08_15.json\"\n",
-    "url = \"https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemas.json\"\n",
-    "#bioschemasfile = os.path.join(script_path,'bioschemas.json')\n",
-    "#with open(bioschemasfile,'r') as infile:\n",
-    "#    url = json.load(infile)\n",
+    "#url = \"https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemas.json\"\n",
+    "\n",
     "\n",
     "sc = Schema(url, base_schema=[\"schema.org\",\"bioschemastypes\",\"bioschemas\",\n",
     "                              \"bioschemasdrafts\",\"bioschemastypesdrafts\",\n",