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Add a button to facilitate sharing of downscaled registered projects, for the sake of building automated registration models #24

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NicoKiaru opened this issue Aug 26, 2024 · 1 comment
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enhancement New feature or request

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@NicoKiaru
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It would be nice to have a simple button that would generate a small zip containing all the information required in the optics of training a an automated registration model.

What I image is the following:

  • all images downscaled to 10 micron resolution
  • unregistered original image data (2D only)
  • resampled registered image data to 10 um
  • selection by the user of a subset of channels to avoid sharing irrelevant data for the registration
  • atlas name
  • generation date
  • user description
  • user contact
  • lab contact
  • data share agreement (potentially delegated to Zenodo)
  • one or several hash to avoid duplicates
  • registration info:
    • atlas slicing angle
    • affine registration
    • spline registration (optional)

Potentially follow quicknii +visualign format

Where to share these data easily ? Zenodo looks like a good fit, a community could be created to collect all of these

@NicoKiaru NicoKiaru added the enhancement New feature or request label Aug 26, 2024
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