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1. qupath-extension-cellpose qupath-extension-cellpose Public

   an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.

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2. ijp-imagetoatlas ijp-imagetoatlas Public

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3. ijl-utilities-wrappers ijl-utilities-wrappers Public

   Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)

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4. IPA4LSx IPA4LSx Public

   ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX

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5. qupath-extension-warpy qupath-extension-warpy Public

   ImgLib2 RealTransform brought to QuPath

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6. qupath-groovy-python-runner qupath-groovy-python-runner Public

   A proof of concept to run python segmentations and recovering the results within QuPath

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