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@BGI-shenzhen

hewm2008@bgi

hewm2008‘s software

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  1. PopLDdecay PopLDdecay Public

    PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

    C++ 187 55

  2. LDBlockShow LDBlockShow Public

    LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

    Perl 144 41

  3. RectChr RectChr Public

    Multi-level visualization of genomic statistical variables on rectangular chromosomes

    Perl 84 10

  4. Reseqtools Reseqtools Public

    A Toolkit for analyzing next-generation DNA Re-Sequencing data

    81 29

  5. VCF2Dis VCF2Dis Public

    VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

    C++ 82 20

  6. BamDeal BamDeal Public

    BamDeal: a comprehensive toolkit for bam manipulation

    C++ 52 20

Repositories

Showing 10 of 14 repositories
  • VCF2Dis Public

    VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

    BGI-shenzhen/VCF2Dis’s past year of commit activity
    C++ 82 MIT 20 1 0 Updated Dec 16, 2024
  • RectChr Public

    Multi-level visualization of genomic statistical variables on rectangular chromosomes

    BGI-shenzhen/RectChr’s past year of commit activity
    Perl 84 10 0 0 Updated Nov 21, 2024
  • PopLDdecay Public

    PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

    BGI-shenzhen/PopLDdecay’s past year of commit activity
    C++ 187 MIT 55 7 0 Updated Aug 15, 2024
  • LDBlockShow Public

    LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

    BGI-shenzhen/LDBlockShow’s past year of commit activity
    Perl 144 MIT 41 9 1 Updated Oct 5, 2023
  • BamDeal Public

    BamDeal: a comprehensive toolkit for bam manipulation

    BGI-shenzhen/BamDeal’s past year of commit activity
    C++ 52 MIT 20 2 1 Updated Dec 21, 2022
  • fqcheck Public Forked from hewm2008/fqcheck

    fqcheck: A new simple and efficient software to stat base and quality distribution of fq file

    BGI-shenzhen/fqcheck’s past year of commit activity
    C++ 1 3 0 0 Updated Feb 17, 2022
  • FxTools Public

    FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation

    BGI-shenzhen/FxTools’s past year of commit activity
    C++ 31 MIT 11 2 0 Updated Feb 16, 2022
  • Reseqtools Public

    A Toolkit for analyzing next-generation DNA Re-Sequencing data

    BGI-shenzhen/Reseqtools’s past year of commit activity
    81 GPL-2.0 29 3 0 Updated Feb 15, 2022
  • gcaPDA Public

    gamete cell assisted chromosome-scale phased diploid assembler

    BGI-shenzhen/gcaPDA’s past year of commit activity
    Perl 5 1 0 0 Updated Mar 26, 2021
  • RRSelection Public

    RRSelection: A linkage disequilibrium method to detect selection region across population VCF

    BGI-shenzhen/RRSelection’s past year of commit activity
    C++ 13 MIT 2 0 0 Updated Feb 11, 2019

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C++ Perl

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