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@AbeelLab

AbeelLab

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  1. genometools genometools Public

    GenomeTools is a collection of algorithms to manipulate genomics related file format. The primary purpose is to convert file formats from one to another.

    Java 6 1

  2. atk atk Public

    Abeel Toolkit is set of utility classes that are used in our other projects.

    Java 1 1

  3. javaml javaml Public

    Java Machine Learning Library

    Java 42 20

  4. nanopore-cenpk113-7d nanopore-cenpk113-7d Public

    Supplementary data for our CENPK113-7D assembly paper

  5. hat hat Public

    Haplotype Assembly Tool

    Python 7 2

  6. quanttb quanttb Public

    QuantTB is a SNP based method to identify and quantify individual strains present in tuberculosis whole genome sequencing datasets.

    Python 6 5

Repositories

Showing 10 of 52 repositories
  • SAFPredDB Public

    Bacterial synteny database

    AbeelLab/SAFPredDB’s past year of commit activity
    Python 0 1 0 0 Updated Jun 6, 2024
  • safpred Public

    Synteny-aware gene function prediction for bacteria using protein embeddings

    AbeelLab/safpred’s past year of commit activity
    Python 3 1 2 0 Updated Jun 6, 2024
  • abaumannii-pangenome Public
    AbeelLab/abaumannii-pangenome’s past year of commit activity
    Python 0 0 0 0 Updated Feb 1, 2024
  • RP2023_kirbeyi Public Forked from drkkrby/RP2023_kirbeyi

    Research Project 2023-2024 Q2 - Kirbeyi

    AbeelLab/RP2023_kirbeyi’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 1 0 0 Updated Jan 28, 2024
  • RP2023_Jarosz Public Forked from MJarosz22/RP2023_Jarosz
    AbeelLab/RP2023_Jarosz’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Jan 28, 2024
  • RP2023_Alwani Public Forked from NeilAlwani/RP2023_Alwani

    Contains the PPCA, VAE and CVAE model used for the research project. Aside from this there are separate folders for research documents and the dataset related to the project.

    AbeelLab/RP2023_Alwani’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Jan 28, 2024
  • SHIP Public
    AbeelLab/SHIP’s past year of commit activity
    Python 6 GPL-3.0 1 1 0 Updated Jan 18, 2024
  • simulated-dbtl Public
    AbeelLab/simulated-dbtl’s past year of commit activity
    Jupyter Notebook 3 MIT 1 0 0 Updated Jul 24, 2023
  • quanttb Public

    QuantTB is a SNP based method to identify and quantify individual strains present in tuberculosis whole genome sequencing datasets.

    AbeelLab/quanttb’s past year of commit activity
    Python 6 GPL-3.0 5 0 3 Updated Jul 6, 2023
  • javaml Public

    Java Machine Learning Library

    AbeelLab/javaml’s past year of commit activity
    Java 42 20 3 1 Updated Jul 3, 2023
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