Release v1.0.0-rc.1 · zavolanlab/zarp

What's Changed

fix: DRR/ERR IDs not supported in SRA workflow by @uniqueg in #131
fix: do not use nan in htsinfer call by @ninsch3000 in #137
fix: allow global error flag variable to be changed inside function by @ninsch3000 in #138
perf: pin htsinfer docker image to latest by @balajtimate in #140
doc: DOI badges for biorxiv, zenodo, workflowhub by @ninsch3000 in #141
ci: fix ZARP Conda environment persistence by @dominikburri in #142
fix: update htsinfer_to_tsv.py with zarp-cli compatibilities by @balajtimate in #143
fix: change htsinfer_to_tsv.py exit code by @balajtimate in #144
feat(htsinfer): interface log and cluster log dirs via config.yaml by @ninsch3000 in #146
fix(ci): fix failing jobs, add htsinfer job by @ninsch3000 in #149
fix: pin Python version by @balajtimate in #151
fix: Cutadapt compression level problem by @uniqueg in #153
build: upgrade tool versions by @uniqueg in #155
docs: fix field names in sample table example by @magmir71 in #134
fix: major rewrite of SRA download workflow by @mkatsanto in #157
fix: too little RAM allocated for BED sorting by @uniqueg in #161
ci: upgrade used Actions by @uniqueg in #163
chore: deprecation warnings for get_sample() by @uniqueg in #164
fix(sra): make layout extraction more resilient by @uniqueg in #167
fix(sra): improve layout extraction from NCBI db by @mkatsanto in #168
feat(htsinfer): support Conda execution by @uniqueg in #169
docs: update ZARP-cli installation instructions by @uniqueg in #170

Full Changelog: v0.5.0...v1.0.0-rc.1