publish templates breaks the contribution workflow

[MustafaJafar]

Is there an existing issue for this?

• I have searched the existing issues and added correct labels.

Description

Current Behavior

When using a custom publish template for usd product in Houdini, it breaks the contribution workflow.
I checked the published files and found they were pointing to the other layer as if they were published using the default template.

examples:

here's a published assembly layer.

#usda 1.0
(
    defaultPrim = "hou_component_builder"
    metersPerUnit = 1
    subLayers = [
        @\\storage\work\ayon\RnD\features\hou_component_builder\publish\usd\usdSimpleCube\v010\rnd_hou_component_builder_usdSimpleCube_v010.usd:SDF_FORMAT_ARGS:layer_id=usdSimpleCube@
    ]
    upAxis = "Y"
)

According to my publish template, it should be

#usda 1.0
(
    defaultPrim = "hou_component_builder"
    metersPerUnit = 1
    subLayers = [
        @\\storage\work\ayon\RnD\features\hou_component_builder\publish\usd\usdSimpleCube\v010\componentoutput1.usd:SDF_FORMAT_ARGS:layer_id=usdSimpleCube@
    ]
    upAxis = "Y"
)

Expected Behavior

Contribution workflow should get the correct file names.

Steps To Reproduce:

1. use a different publish template, steps.
2. publish with contribution enabled.

Additional context:

Version

Version of the server, ayon-core and the addon that's affected

What platform were you running when you found the bug?

Windows

You can also provide any additional information relevant to the issue.

Relevant log output: