From dd3159c2f7ee2c17d61c6c5826915dc1c1b675a3 Mon Sep 17 00:00:00 2001 From: xuewei cao Date: Mon, 8 Jan 2024 21:44:56 -0500 Subject: [PATCH] update --- _pages/Research.md | 2 +- _pages/publications.md | 11 +++++++---- 2 files changed, 8 insertions(+), 5 deletions(-) diff --git a/_pages/Research.md b/_pages/Research.md index 0cf64db306c24..30883af2b3852 100644 --- a/_pages/Research.md +++ b/_pages/Research.md @@ -12,4 +12,4 @@ author_profile: true ## 2.Multi-omics colocalization analysis -![Drag Racing](../images/ColocBoost.jpg) \ No newline at end of file + \ No newline at end of file diff --git a/_pages/publications.md b/_pages/publications.md index e831bfd3d4a04..55be7d659c2bb 100644 --- a/_pages/publications.md +++ b/_pages/publications.md @@ -7,18 +7,21 @@ author_profile: true \# denote co-first author; \* denote the corresponding author. -## \[2023+\] +## \[2024+\] * **Cao, X.**, Zhang, S., & Sha, Q.\* (2023+). A novel method for multiple phenotype association studies based on genotype and phenotype network. *In revision at PLoS Genetics*. [bioRxiv](https://doi.org/10.1101/2023.02.23.529687) [software](https://github.com/xueweic/GPN) * **Cao, X.**\#, Zhu, L.\#, Liang, X., Zhang, S. & Sha, Q.\* (2023+). Constructing genotype and phenotype network helps reveal disease heritability and phenome-wide association studies. *Submitted in October 2023*. [software](https://github.com/xueweic/GPN) -* **Cao, X.**\#, Keyak, J.H.\#, Sigurdsson, S., Zhao, C., Zhou, W., Liu, A., Lang, T.F., Deng, H.W., Guðnason, V.\* & Sha, Q.\* (2023+). A New Hip Fracture Risk Index Derived from FEA-Computed Proximal Femur Fracture Loads and Energies-to-Failure. *In revision at Osteoporosis International*. [arXiv](https://arxiv.org/abs/2210.01032) -* Xie, H., **Cao, X.**, Zhang, S. & Sha, Q. (2023+). Joint analysis of multiple phenotypes for extremely unbalanced case-control association studies using multi-layer network. *In revision at Bioinformatics*. * Zhao, C., Liu, A., Zhang, X., **Cao, X.**, Ding, Z., Sha, Q., Shen, H., Deng, H.W.\* & Zhou, W.\* CLCLSA: Cross-omics Linked embedding with Contrastive Learning and Self Attention for multi-omics integration with incomplete multi-omics data. (2023+). *Submitted in August 2023*. [arXiv](https://arxiv.org/abs/2304.05542) * Zhao, C.\#, Su, K.\#, Wu, C., **Cao, X.**, Sha, Q., Li, W., Luo, Z., Qin, T., Qiu, C., Liu, A., Jiang, L., Zhang, X., Shen, H., Deng, H.W.\* & Zhou, W.\* (2023+). Multi-View Variational Autoencoder for Missing Value Imputation in Untargeted Metabolomics. *Submitted in October 2023*. [arXiv](https://arxiv.org/abs/2310.07990) -* Zhu, L., Yan, S., **Cao, X.**, Sha, Q. & Zhang, S.\* (2023+). Integrating external controls by regression calibration for genome-wide association study. *Will be submitted soon*. + +## \[2024\] +* **Cao, X.**\#, Keyak, J.H.\#, Sigurdsson, S., Zhao, C., Zhou, W., Liu, A., Lang, T.F., Deng, H.W., Guðnason, V.\* & Sha, Q.\* (2023+). A New Hip Fracture Risk Index Derived from FEA-Computed Proximal Femur Fracture Loads and Energies-to-Failure. *Osteoporosis International*. Accepted. [arXiv](https://arxiv.org/abs/2210.01032) +* Zhu, L., Yan, S., **Cao, X.**, Sha, Q. & Zhang, S.\* (2023+). Integrating external controls by regression calibration for genome-wide association study. *Genes*. 15(1), 67. [doi](https://doi.org/10.3390/genes15010067) + ## \[2023\] * **Cao, X.**\#, Zhang, L.\#, Islam, M.K., Zhao, M., He, C., Zhang, K., Liu, S., Sha, Q.\* & Wei, H.\*, (2023). TGPred: efficient methods for predicting target genes of a transcription factor by integrating statistics, machine learning and optimization. *NAR Genomics and Bioinformatics*, 5(3), p.lqad083. [doi](https://doi.org/10.1093/nargab/lqad083) +* Xie, H., **Cao, X.**, Zhang, S. & Sha, Q. (2023+). Joint analysis of multiple phenotypes for extremely unbalanced case-control association studies using multi-layer network. *Bioinformatics*. 39(12), btad707. [doi](https://doi.org/10.1093/bioinformatics/btad707) * Wang, M., **Cao, X.**, Zhang, S. & Sha, Q.\* (2023). A clustering linear combination method for multiple phenotype association studies based on GWAS summary statistics. *Scientific Reports*. 13(1), p.3389. [doi](https://www.nature.com/articles/s41598-023-30415-3) * Xie, H., **Cao, X.**, Zhang, S. & Sha, Q.\* (2023). Joint analysis of multiple phenotypes for extremely unbalanced case-control association studies. *Genetic Epidemiology*. 47(2), pp.185-197. [doi](https://doi.org/10.1002/gepi.22513) * Zhao, C.\#, Keyak, J.H.\#, **Cao, X.**, Sha, Q., Wu, L., Luo, Z., Zhao, L., Tian, Q., Qiu, C., Su, R., Shen, H., Deng, H.W.\* & Zhou, W.\* (2023). Multi-view information fusion using multi-view variational autoencoders to predict proximal femoral strength. *Frontiers in Endocrinology, section Bone Research*. [arXiv](https://arxiv.org/abs/2210.00674)