From a2cc9376c4b814b7f9ac7a5846cc263da34ae52b Mon Sep 17 00:00:00 2001 From: xuewei cao <36172337+xueweic@users.noreply.github.com> Date: Fri, 20 Oct 2023 16:35:34 -0400 Subject: [PATCH 1/5] n --- .DS_Store | Bin 10244 -> 10244 bytes _pages/Research.md | 4 ++-- _pages/about.md | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.DS_Store b/.DS_Store index 2bce7931c47c49321a30b32721c581f727ac1c0d..f5b2264d11638e198a85e5d03c97eea654a9e7d6 100644 GIT binary patch delta 41 xcmZn(XbG6$&nUYwU^hRb>}DPTc9zY>B2&00HY99jSNO#;d9sAu=6cbmOaLE)4ix|Z delta 120 zcmZn(XbG6$&nUk!U^hRb{AL~jc9uXchIobohJ1!1h7yJ}Af3aI$&l}vlb@WFlb^)E zz#zcD!0Zg9_5Onakj22j2Gvsx)KiSAmcendnTXP6HIYW{&Fl)lST-*dVP*yZa`hj4 diff --git a/_pages/Research.md b/_pages/Research.md index d0f297e53f465..bff478134789d 100644 --- a/_pages/Research.md +++ b/_pages/Research.md @@ -5,6 +5,6 @@ permalink: /research/ author_profile: true --- -## \[Biological Network Analysis\] +## 1. Biological Network Analysis -![Drag Racing](../images/Biological_Network.png) +Drag Racing diff --git a/_pages/about.md b/_pages/about.md index e823854461cad..d1d67ec1702c8 100644 --- a/_pages/about.md +++ b/_pages/about.md @@ -11,7 +11,7 @@ redirect_from: ![Drag Racing](images/welcome.png) -I am Xuewei Cao (She/Her), a postdoctoral research scientist at Center for Statistical Genetics in the Gertrude H. Sergievsky Center and Department of Neurology at Columbia University under supervisions of [Dr. Gao Wang](https://wanggroup.org/) and co-mentored by [Dr. Kushal K Dey](https://www.mskcc.org/research/ski/labs/kushal-dey) from Memorial Sloan Kettering Cancer Center (MSK). +I am Xuewei Cao (She/Her), a postdoctoral research scientist at Center for Statistical Genetics in the Gertrude H. Sergievsky Center at Columbia University under supervisions of [Dr. Gao Wang](https://wanggroup.org/) and co-mentored by [Dr. Kushal K Dey](https://www.mskcc.org/research/ski/labs/kushal-dey) from Memorial Sloan Kettering Cancer Center (MSK). I received my Ph.D. in statistics from Department of Mathematical Sciences at Michigan Techological University (2023) under the supervisions of [Dr. Qiuying Sha](https://www.mtu.edu/math/department/faculty-staff/faculty/sha/) and [Dr. Shuanglin Zhang](https://pages.mtu.edu/~shuzhang/). I received my M.S. in science of system theory from School of System Science at Beijing Normal University (2018) and my B.S. in statistics from Department of Mathematical Sciences at Heilongjiang University (2015). From 08414b7036a7d2419be7b6d10d00f521e01d8504 Mon Sep 17 00:00:00 2001 From: xuewei cao <36172337+xueweic@users.noreply.github.com> Date: Fri, 20 Oct 2023 16:37:26 -0400 Subject: [PATCH 2/5] n --- _pages/cv.md | 3 +-- _pages/publications.md | 2 +- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/_pages/cv.md b/_pages/cv.md index 4e3142d741316..44fb3691302f6 100644 --- a/_pages/cv.md +++ b/_pages/cv.md @@ -13,8 +13,7 @@ You can download CV from [here](/files/CV_Xuewei.pdf) (Updated in Sep. 2023). Professional Appointment ====== * Postdoctoral Research Scientist \\ -Center for Statistical Genetics in the Gertrude H. Sergievsky Center\\ -Department of Neurology, Columbia University\\ +Center for Statistical Genetics in the Gertrude H. Sergievsky Center, Columbia University\\ **Research direction**: Fine-mapping and colocalization analysis, *trans*-QTL network analysis Education diff --git a/_pages/publications.md b/_pages/publications.md index 5c9fe40e031d3..66065f631f181 100644 --- a/_pages/publications.md +++ b/_pages/publications.md @@ -10,12 +10,12 @@ author_profile: true ## \[2023+\] * **Cao, X.**, Zhang, S., & Sha, Q.\* (2023+). A novel method for multiple phenotype association studies based on genotype and phenotype network. *Submitted in August 2023*. [bioRxiv](https://doi.org/10.1101/2023.02.23.529687) [software](https://github.com/xueweic/GPN) +* **Cao, X.**\#, Zhu, L.\#, Liang, X., Zhang, S. & Sha, Q.\* (2023+). Constructing genotype and phenotype network helps reveal disease heritability and phenome-wide association studies. *Submitted in October 2023* [software](https://github.com/xueweic/GPN) * **Cao, X.**\#, Keyak, J.H.\#, Sigurdsson, S., Zhao, C., Zhou, W., Liu, A., Lang, T.F., Deng, H.W., Guðnason, V.\* & Sha, Q.\* (2023+). A New Hip Fracture Risk Index Derived from FEA-Computed Proximal Femur Fracture Loads and Energies-to-Failure. *In revision at Osteoporosis International*. [arXiv](https://arxiv.org/abs/2210.01032) * Xie, H., **Cao, X.**, Zhang, S. & Sha, Q. (2023+). Joint analysis of multiple phenotypes for extremely unbalanced case-control association studies using multi-layer network. *In revision at Bioinformatics*. * Zhao, C.\#, Keyak, J.H.\#, **Cao, X.**, Sha, Q., Wu, L., Luo, Z., Zhao, L., Tian, Q., Qiu, C., Su, R., Shen, H., Deng, H.W.\* & Zhou, W.\* (2023+). Multi-view information fusion using multi-view variational autoencoders to predict proximal femoral strength. *In revision at Frontiers in Endocrinology, section Bone Research*. [arXiv](https://arxiv.org/abs/2210.00674) * Zhao, C., Liu, A., Zhang, X., **Cao, X.**, Ding, Z., Sha, Q., Shen, H., Deng, H.W.\* & Zhou, W.\* CLCLSA: Cross-omics Linked embedding with Contrastive Learning and Self Attention for multi-omics integration with incomplete multi-omics data. (2023+). *Submitted in August 2023*. [arXiv](https://arxiv.org/abs/2304.05542) * Zhao, C.\#, Su, K.\#, Wu, C., **Cao, X.**, Sha, Q., Li, W., Luo, Z., Qin, T., Qiu, C., Liu, A., Jiang, L., Zhang, X., Shen, H., Deng, H.W.\* & Zhou, W.\* (2023+). Multi-View Variational Autoencoder for Missing Value Imputation in Untargeted Metabolomics. *Submitted in October 2023* -* **Cao, X.**\#, Zhu, L.\#, Liang, X., Zhang, S. & Sha, Q.\* (2023+). Constructing genotype and phenotype network helps reveal disease heritability and phenome-wide association studies. *Will be submitted soon* [software](https://github.com/xueweic/GPN) * Zhu, L., Yan, S., **Cao, X.**, Sha, Q. & Zhang, S.\* (2023+). Integrating external controls by regression calibration for genome-wide association study. *Will be submitted soon* ## \[2023\] From c1e541aeae0aea62c1c2135fe06294027e762843 Mon Sep 17 00:00:00 2001 From: xuewei cao <36172337+xueweic@users.noreply.github.com> Date: Fri, 20 Oct 2023 16:38:23 -0400 Subject: [PATCH 3/5] Update about.md --- _pages/about.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_pages/about.md b/_pages/about.md index d1d67ec1702c8..2eee876bdd5f2 100644 --- a/_pages/about.md +++ b/_pages/about.md @@ -11,7 +11,7 @@ redirect_from: ![Drag Racing](images/welcome.png) -I am Xuewei Cao (She/Her), a postdoctoral research scientist at Center for Statistical Genetics in the Gertrude H. Sergievsky Center at Columbia University under supervisions of [Dr. Gao Wang](https://wanggroup.org/) and co-mentored by [Dr. Kushal K Dey](https://www.mskcc.org/research/ski/labs/kushal-dey) from Memorial Sloan Kettering Cancer Center (MSK). +I am Xuewei Cao (She/Her), a postdoctoral research scientist at Center for Statistical Genetics in the Gertrude H. Sergievsky Center at Columbia University under supervisions of [Dr. Gao Wang](https://wanggroup.org/) and co-mentored by [Dr. Kushal K Dey](https://www.mskcc.org/research/ski/labs/kushal-dey) from Memorial Sloan Kettering Cancer Center (MSKCC). I received my Ph.D. in statistics from Department of Mathematical Sciences at Michigan Techological University (2023) under the supervisions of [Dr. Qiuying Sha](https://www.mtu.edu/math/department/faculty-staff/faculty/sha/) and [Dr. Shuanglin Zhang](https://pages.mtu.edu/~shuzhang/). I received my M.S. in science of system theory from School of System Science at Beijing Normal University (2018) and my B.S. in statistics from Department of Mathematical Sciences at Heilongjiang University (2015). From 83c51766664ff860797a10d4014bec0b6a4e91dc Mon Sep 17 00:00:00 2001 From: xuewei cao <36172337+xueweic@users.noreply.github.com> Date: Fri, 20 Oct 2023 16:40:47 -0400 Subject: [PATCH 4/5] Update Research.md --- _pages/Research.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_pages/Research.md b/_pages/Research.md index bff478134789d..c32d9af4d004f 100644 --- a/_pages/Research.md +++ b/_pages/Research.md @@ -7,4 +7,4 @@ author_profile: true ## 1. Biological Network Analysis -Drag Racing +Drag Racing From a6b8c4b08b8f15760426a6a63049621895d3c5e2 Mon Sep 17 00:00:00 2001 From: xuewei cao <36172337+xueweic@users.noreply.github.com> Date: Fri, 20 Oct 2023 16:46:32 -0400 Subject: [PATCH 5/5] Update publications.md --- _pages/publications.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_pages/publications.md b/_pages/publications.md index 66065f631f181..06580fd900644 100644 --- a/_pages/publications.md +++ b/_pages/publications.md @@ -10,7 +10,7 @@ author_profile: true ## \[2023+\] * **Cao, X.**, Zhang, S., & Sha, Q.\* (2023+). A novel method for multiple phenotype association studies based on genotype and phenotype network. *Submitted in August 2023*. [bioRxiv](https://doi.org/10.1101/2023.02.23.529687) [software](https://github.com/xueweic/GPN) -* **Cao, X.**\#, Zhu, L.\#, Liang, X., Zhang, S. & Sha, Q.\* (2023+). Constructing genotype and phenotype network helps reveal disease heritability and phenome-wide association studies. *Submitted in October 2023* [software](https://github.com/xueweic/GPN) +* **Cao, X.**\#, Zhu, L.\#, Liang, X., Zhang, S. & Sha, Q.\* (2023+). Constructing genotype and phenotype network helps reveal disease heritability and phenome-wide association studies. *Submitted in October 2023*. [software](https://github.com/xueweic/GPN) * **Cao, X.**\#, Keyak, J.H.\#, Sigurdsson, S., Zhao, C., Zhou, W., Liu, A., Lang, T.F., Deng, H.W., Guðnason, V.\* & Sha, Q.\* (2023+). A New Hip Fracture Risk Index Derived from FEA-Computed Proximal Femur Fracture Loads and Energies-to-Failure. *In revision at Osteoporosis International*. [arXiv](https://arxiv.org/abs/2210.01032) * Xie, H., **Cao, X.**, Zhang, S. & Sha, Q. (2023+). Joint analysis of multiple phenotypes for extremely unbalanced case-control association studies using multi-layer network. *In revision at Bioinformatics*. * Zhao, C.\#, Keyak, J.H.\#, **Cao, X.**, Sha, Q., Wu, L., Luo, Z., Zhao, L., Tian, Q., Qiu, C., Su, R., Shen, H., Deng, H.W.\* & Zhou, W.\* (2023+). Multi-view information fusion using multi-view variational autoencoders to predict proximal femoral strength. *In revision at Frontiers in Endocrinology, section Bone Research*. [arXiv](https://arxiv.org/abs/2210.00674)