From 8e4de364d9bc42566099036e43057f4a29e738f4 Mon Sep 17 00:00:00 2001 From: Vince Buffalo Date: Fri, 9 Feb 2024 09:51:36 -0800 Subject: [PATCH] checking in new test data file --- tests_data/decode_2010_test_map.txt | 298 ---------------------------- tests_data/test_hapmap.txt | 10 + 2 files changed, 10 insertions(+), 298 deletions(-) delete mode 100644 tests_data/decode_2010_test_map.txt create mode 100644 tests_data/test_hapmap.txt diff --git a/tests_data/decode_2010_test_map.txt b/tests_data/decode_2010_test_map.txt deleted file mode 100644 index a16d08c..0000000 --- a/tests_data/decode_2010_test_map.txt +++ /dev/null @@ -1,298 +0,0 @@ -Chromosome Position(bp) Rate(cM/Mb) -chr1 6000669 0.746595 -chr1 6010669 2.023292 -chr1 6020669 1.463050 -chr1 6030669 0.000014 -chr1 6040669 3.273815 -chr1 6050669 5.538514 -chr1 6060669 5.676241 -chr1 6070669 5.214263 -chr1 6080669 3.524091 -chr1 6090669 2.562367 -chr1 6100669 0.000000 -chr1 6110669 0.000000 -chr1 6120669 0.560013 -chr1 6130669 7.912390 -chr1 6140669 7.182596 -chr1 6150669 0.000030 -chr1 6160669 0.179823 -chr1 6170669 0.984741 -chr1 6180669 6.985398 -chr1 6190669 1.181489 -chr1 6200669 0.980045 -chr1 6210669 0.000001 -chr1 6220669 0.000005 -chr1 6230669 0.000002 -chr1 6240669 0.195617 -chr1 6250669 10.79933 -chr1 6260669 4.923994 -chr1 6270669 1.010404 -chr1 6280669 0.000000 -chr1 6290669 0.130776 -chr1 6300669 0.223054 -chr1 6310669 0.223054 -chr1 6320669 0.103122 -chr1 6330669 0.001269 -chr1 6340669 0.001269 -chr1 6350669 0.001269 -chr1 6360669 0.001269 -chr1 6370669 0.001269 -chr1 6380669 0.001323 -chr1 6390669 0.001615 -chr1 6400669 0.009023 -chr1 6410669 0.048591 -chr1 6420669 3.311965 -chr1 6430669 3.806940 -chr1 6440669 2.753425 -chr1 6450669 3.987139 -chr1 6460669 2.142400 -chr1 6470669 2.211751 -chr1 6480669 2.826066 -chr1 6490669 0.722332 -chr1 6500669 3.262397 -chr1 6510669 0.888024 -chr1 6520669 0.000000 -chr1 6530669 0.000000 -chr1 6540669 0.000000 -chr1 6550669 0.000000 -chr1 6560669 1.188989 -chr1 6570669 2.617326 -chr1 6580669 0.000000 -chr1 6590669 0.000000 -chr1 6600669 0.000000 -chr1 6610669 0.000000 -chr1 6620669 0.000000 -chr1 6630669 0.000000 -chr1 6640669 0.031676 -chr1 6650669 0.041180 -chr1 6660669 0.047496 -chr1 6670669 0.060266 -chr1 6680669 0.301481 -chr1 6690669 0.360697 -chr1 6700669 0.000000 -chr1 6710669 0.000000 -chr1 6720669 2.421823 -chr1 6730669 0.000000 -chr1 6740669 0.000000 -chr1 6750669 0.030975 -chr1 6760669 0.267138 -chr1 6770669 0.128701 -chr1 6780669 0.070365 -chr1 6790669 0.070365 -chr1 6800669 0.005981 -chr1 6810669 0.000000 -chr1 6820669 0.000000 -chr1 6830669 0.000000 -chr1 6840669 0.000000 -chr1 6850669 0.000000 -chr1 6860669 0.000000 -chr1 6870669 0.000000 -chr1 6880669 0.000000 -chr1 6890669 0.000181 -chr1 6900669 1.872161 -chr1 6910669 0.147155 -chr1 6920669 1.271715 -chr1 6930669 1.271715 -chr1 6940669 1.266467 -chr1 6950669 1.447295 -chr1 6960669 0.594136 -chr1 6970669 0.435450 -chr1 6980669 0.175606 -chr2 5024443 1.552271 -chr2 5034443 1.552271 -chr2 5044443 1.552271 -chr2 5054443 1.552271 -chr2 5064443 1.552271 -chr2 5074443 1.552271 -chr2 5084443 0.793999 -chr2 5094443 0.000025 -chr2 5104443 0.000017 -chr2 5114443 0.000017 -chr2 5124443 0.000002 -chr2 5134443 0.000000 -chr2 5144443 0.243856 -chr2 5154443 1.918936 -chr2 5164443 0.000000 -chr2 5174443 1.885490 -chr2 5184443 5.371328 -chr2 5194443 6.192948 -chr2 5204443 1.239209 -chr2 5214443 0.472705 -chr2 5224443 1.336251 -chr2 5234443 1.574374 -chr2 5244443 1.574374 -chr2 5254443 1.574374 -chr2 5264443 7.299673 -chr2 5274443 0.000000 -chr2 5284443 0.406670 -chr2 5294443 1.006111 -chr2 5304443 1.297654 -chr2 5314443 2.326105 -chr2 5324443 0.000000 -chr2 5334443 0.000000 -chr2 5344443 0.000000 -chr2 5354443 0.000000 -chr2 5364443 0.268418 -chr2 5374443 1.079875 -chr2 5384443 1.514287 -chr2 5394443 0.000000 -chr2 5404443 6.137154 -chr2 5414443 6.547622 -chr2 5424443 2.827263 -chr2 5434443 0.435357 -chr2 5444443 11.92755 -chr2 5454443 3.866569 -chr2 5464443 1.685853 -chr2 5474443 4.597484 -chr2 5484443 7.489628 -chr2 5494443 1.458231 -chr2 5504443 3.421633 -chr2 5514443 6.584612 -chr2 5524443 2.258016 -chr2 5534443 1.284206 -chr2 5544443 2.745920 -chr2 5554443 0.810027 -chr2 5564443 2.133874 -chr2 5574443 0.000000 -chr2 5584443 0.000000 -chr2 5594443 1.063204 -chr2 5604443 0.000000 -chr2 5614443 3.913138 -chr2 5624443 16.33110 -chr2 5634443 2.170685 -chr2 5644443 1.164291 -chr2 5654443 0.060685 -chr2 5664443 0.000000 -chr2 5674443 0.758489 -chr2 5684443 0.856566 -chr2 5694443 0.856566 -chr2 5704443 0.856566 -chr2 5714443 0.856566 -chr2 5724443 1.757837 -chr2 5734443 8.394131 -chr2 5744443 0.428384 -chr2 5754443 1.856722 -chr2 5764443 0.000000 -chr2 5774443 0.000000 -chr2 5784443 2.413897 -chr2 5794443 0.307011 -chr2 5804443 0.631861 -chr2 5814443 2.669932 -chr2 5824443 0.000000 -chr2 5834443 0.179944 -chr2 5844443 0.648664 -chr2 5854443 0.000000 -chr2 5864443 0.745850 -chr2 5874443 1.189364 -chr2 5884443 0.501317 -chr2 5894443 0.570182 -chr2 5904443 7.277858 -chr2 5914443 0.000477 -chr2 5924443 7.710440 -chr2 5934443 0.000031 -chr2 5944443 0.000000 -chr2 5954443 0.000000 -chr2 5964443 0.742661 -chr2 5974443 1.179453 -chr2 5984443 0.002240 -chr2 5994443 4.307672 -chr2 6004443 0.000000 -chr3 5046894 10.64411 -chr3 5056894 9.986328 -chr3 5066894 3.602384 -chr3 5076894 2.460953 -chr3 5086894 26.27610 -chr3 5096894 2.504649 -chr3 5106894 1.804089 -chr3 5116894 2.835807 -chr3 5126894 0.733710 -chr3 5136894 0.733710 -chr3 5146894 0.672918 -chr3 5156894 0.108278 -chr3 5166894 0.108278 -chr3 5176894 0.289002 -chr3 5186894 0.301463 -chr3 5196894 0.301463 -chr3 5206894 0.156158 -chr3 5216894 0.037662 -chr3 5226894 0.215457 -chr3 5236894 2.083384 -chr3 5246894 10.65443 -chr3 5256894 4.429434 -chr3 5266894 4.522011 -chr3 5276894 6.500327 -chr3 5286894 2.226008 -chr3 5296894 0.325378 -chr3 5306894 0.776495 -chr3 5316894 0.027397 -chr3 5326894 1.915761 -chr3 5336894 0.084375 -chr3 5346894 7.163210 -chr3 5356894 2.707681 -chr3 5366894 0.446767 -chr3 5376894 0.000000 -chr3 5386894 8.246309 -chr3 5396894 4.143360 -chr3 5406894 0.000000 -chr3 5416894 0.000000 -chr3 5426894 2.452359 -chr3 5436894 1.245422 -chr3 5446894 1.255122 -chr3 5456894 1.786497 -chr3 5466894 3.234763 -chr3 5476894 24.07315 -chr3 5486894 0.000022 -chr3 5496894 0.000000 -chr3 5506894 0.000000 -chr3 5516894 1.972394 -chr3 5526894 1.032322 -chr3 5536894 4.096099 -chr3 5546894 7.020589 -chr3 5556894 3.275924 -chr3 5566894 2.900866 -chr3 5576894 1.017106 -chr3 5586894 3.405825 -chr3 5596894 3.722481 -chr3 5606894 0.000000 -chr3 5616894 0.000000 -chr3 5626894 0.000000 -chr3 5636894 0.000000 -chr3 5646894 0.000000 -chr3 5656894 0.000000 -chr3 5666894 1.837783 -chr3 5676894 1.810645 -chr3 5686894 0.140680 -chr3 5696894 0.000023 -chr3 5706894 2.552364 -chr3 5716894 2.024765 -chr3 5726894 0.177264 -chr3 5736894 0.819907 -chr3 5746894 0.512524 -chr3 5756894 0.000000 -chr3 5766894 0.417875 -chr3 5776894 43.05484 -chr3 5786894 1.881974 -chr3 5796894 2.214665 -chr3 5806894 2.131870 -chr3 5816894 0.000000 -chr3 5826894 0.710425 -chr3 5836894 0.000000 -chr3 5846894 0.000000 -chr3 5856894 0.000000 -chr3 5866894 3.189427 -chr3 5876894 1.015402 -chr3 5886894 0.192219 -chr3 5896894 0.036432 -chr3 5906894 2.620555 -chr3 5916894 2.050218 -chr3 5926894 0.000019 -chr3 5936894 0.000051 -chr3 5946894 0.000003 -chr3 5956894 0.000000 -chr3 5966894 0.000000 -chr3 5976894 0.682530 -chr3 5986894 1.110437 -chr3 5996894 0.640657 -chr3 6006894 0.000000 -chr3 6016894 0.000000 -chr3 6026894 0.000000 diff --git a/tests_data/test_hapmap.txt b/tests_data/test_hapmap.txt new file mode 100644 index 0000000..a73ddd2 --- /dev/null +++ b/tests_data/test_hapmap.txt @@ -0,0 +1,10 @@ +Chromosome Position(bp) Rate(cM/Mb) +chr1 10 1.10 +chr1 15 1.50 +chr1 20 4.33 +chr2 3 3.05 +chr2 10 1.31 +chr2 30 5.01 +chr3 2 1.05 +chr3 8 4.11 +chr3 18 1.01