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pyproject.toml
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pyproject.toml
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[project]
name = "genomepy"
description = "Genes and genomes at your fingertips"
authors = [
{name = "Siebren Frölich", email = "[email protected]"},
{name = "Maarten van der Sande", email = "[email protected]"},
{name = "Tilman Schäfers", email = "[email protected]"},
{name = "Simon van Heeringen", email = "[email protected]"},
]
maintainers = [
{name = "Siebren Frölich", email = "[email protected]"},
{name = "Simon van Heeringen", email = "[email protected]"},
]
requires-python = ">=3.7"
dependencies = [
"appdirs",
"biopython >=1.73",
"diskcache",
"click",
"colorama",
"filelock >=3.5",
"loguru",
"mygene",
"mysql-connector-python",
"norns >=0.1.6",
"numpy",
"pandas",
"pyfaidx >=0.7.2.1",
"requests",
"tqdm >=4.51",
]
dynamic = ["version"]
readme = "README.md"
license = {file = "LICENSE"}
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Operating System :: MacOS :: MacOS X",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
keywords = [
"genome",
"assembly",
"gene",
"annotation",
"Ensembl",
"UCSC",
"NCBI",
"GENCODE",
]
[project.urls]
Homepage = "https://github.com/vanheeringen-lab/genomepy"
Documentation = "https://vanheeringen-lab.github.io/genomepy/"
News = "https://github.com/vanheeringen-lab/genomepy/blob/master/CHANGELOG.md"
Readme = "https://github.com/vanheeringen-lab/genomepy/blob/master/README.md"
[project.scripts]
genomepy = "genomepy.cli:cli"
# pyproject.toml documentation:
# https://peps.python.org/pep-0621/
# https://hatch.pypa.io/latest/config/metadata/
# https://setuptools.pypa.io/en/latest/userguide/pyproject_config.html
# https://python-poetry.org/docs/pyproject/
[build-system]
requires = ["hatchling>=1.5.0"]
build-backend = "hatchling.build"
[tool.hatch.version]
path = "genomepy/__about__.py"
# include files specified in .gitignore
[tool.hatch.build]
artifacts = [
"genomepy/config/default.yaml",
]
# # include other files
# [tool.hatch.build.force-include]
# "LICENSE" = "genomepy/LICENSE"
# "README.md" = "genomepy/README.md"
# "CHANGELOG.md" = "genomepy/CHANGELOG.md"
[tool.isort]
profile = "black"
conda_env = "environment.yml"
overwrite_in_place = true
[tool.flakeheaven]
max_line_length = 88
show_source = true
[tool.flakeheaven.plugins]
flake8-bugbear = ["+*"]
pycodestyle = ["+*", "-E501", "-W503"]
pyflakes = ["+*"]
pylint = ["+*"]