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environment.yml
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environment.yml
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name: cryosegnet
channels:
- pytorch
- nvidia
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- blas=1.0=mkl
- brotlipy=0.7.0=py38h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2023.08.22=h06a4308_0
- certifi=2023.7.22=py38h06a4308_0
- cffi=1.15.1=py38h5eee18b_3
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- cryptography=41.0.3=py38hdda0065_0
- cuda-cudart=11.8.89=0
- cuda-cupti=11.8.87=0
- cuda-libraries=11.8.0=0
- cuda-nvrtc=11.8.89=0
- cuda-nvtx=11.8.86=0
- cuda-runtime=11.8.0=0
- ffmpeg=4.3=hf484d3e_0
- filelock=3.9.0=py38h06a4308_0
- freetype=2.12.1=h4a9f257_0
- giflib=5.2.1=h5eee18b_3
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py38heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- idna=3.4=py38h06a4308_0
- intel-openmp=2023.1.0=hdb19cb5_46305
- jinja2=3.1.2=py38h06a4308_0
- jpeg=9e=h5eee18b_1
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libcublas=11.11.3.6=0
- libcufft=10.9.0.58=0
- libcufile=1.7.2.10=0
- libcurand=10.3.3.141=0
- libcusolver=11.4.1.48=0
- libcusparse=11.7.5.86=0
- libdeflate=1.17=h5eee18b_0
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libnpp=11.8.0.86=0
- libnvjpeg=11.9.0.86=0
- libpng=1.6.39=h5eee18b_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h27cfd23_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- lz4-c=1.9.4=h6a678d5_0
- markupsafe=2.1.1=py38h7f8727e_0
- mkl=2023.1.0=h213fc3f_46343
- mkl-service=2.4.0=py38h5eee18b_1
- mkl_fft=1.3.6=py38h417a72b_1
- mkl_random=1.2.2=py38h417a72b_1
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py38h06a4308_0
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=py38h06a4308_0
- numpy=1.24.3=py38hf6e8229_1
- numpy-base=1.24.3=py38h060ed82_1
- openh264=2.1.1=h4ff587b_0
- openssl=3.0.10=h7f8727e_2
- pillow=9.4.0=py38h6a678d5_0
- pip=23.2.1=py38h06a4308_0
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=23.2.0=py38h06a4308_0
- pysocks=1.7.1=py38h06a4308_0
- python=3.8.18=h955ad1f_0
- pytorch=2.0.1=py3.8_cuda11.8_cudnn8.7.0_0
- pytorch-cuda=11.8=h7e8668a_5
- pytorch-mutex=1.0=cuda
- readline=8.2=h5eee18b_0
- requests=2.31.0=py38h06a4308_0
- setuptools=68.0.0=py38h06a4308_0
- sqlite=3.41.2=h5eee18b_0
- sympy=1.11.1=py38h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=2.0.2=py38_cu118
- torchtriton=2.0.0=py38
- torchvision=0.15.2=py38_cu118
- typing_extensions=4.7.1=py38h06a4308_0
- urllib3=1.26.16=py38h06a4308_0
- wheel=0.38.4=py38h06a4308_0
- xz=5.4.2=h5eee18b_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- appdirs==1.4.4
- click==8.1.7
- cycler==0.11.0
- docker-pycreds==0.4.0
- fonttools==4.42.1
- gitdb==4.0.10
- gitpython==3.1.36
- kiwisolver==1.4.5
- matplotlib==3.5.2
- mrcfile==1.4.3
- packaging==23.1
- pathtools==0.1.2
- protobuf==4.24.3
- psutil==5.9.5
- pyparsing==3.1.1
- python-dateutil==2.8.2
- pyyaml==6.0.1
- scipy==1.9.1
- segment-anything==1.0
- sentry-sdk==1.31.0
- setproctitle==1.3.2
- six==1.16.0
- smmap==5.0.0
- tqdm==4.64.1
- wandb==0.13.10
- opencv-python==4.7.0.72