Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)

Physiological modeling into the metaverse of Mycobacterium tuberculosis beta CA inhibition mechanism

Epidemiological effect of TPT

Mbovpan is a nextflow bioinformatic pipeline for Mycobacterium bovis pangenome analysis. The goal of Mbovpan is to help researchers to study the M. bovis pangenome in an automatic and easy way.

Mycobacterial pipeline

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

vSNP -- validate SNPs

Profile RNA-seq data using published TB gene signatures

A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research

Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification

Web-app to explore Mycobacterium tuberculosis complex

Bayesian Multi-Parameter Evidence Synthesis (MPES) to estimate TB epidemiological parameters.

TBVAX Model

Clinical Trial Risk Tool for analysing clinical trial protocols using natural language processing and assessing the risk of ending uninformatively, developed by Fast Data Science

🤖Automates the process of downloading and processing data from the WHO Global Tuberculosis Programme website. Using Selenium for web scraping and Python's pandas library for data processing

A snakemake workflow for WGS-based tuberculosis transmission analysis

Mice studies reanalysis

Repository containing the code and methods for Bosch & DeJesus et al. 2021

WDLization of clockwork