trimmomatic
Here are 14 public repositories matching this topic...
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
-
Updated
Feb 9, 2024 - R
-
Updated
Feb 21, 2024 - Jupyter Notebook
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
-
Updated
Apr 4, 2022 - HTML
Back Up of Trimmomatic for learning and testing/modification. Find Original Code at: https://github.com/usadellab/Trimmomatic
-
Updated
Feb 15, 2022 - Java
The repository contain directories of projects done during the bioinformatics degree program
-
Updated
Nov 25, 2022 - HTML
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
-
Updated
Nov 26, 2023 - HTML
Bulk Rna-seq Analysis
-
Updated
Jan 8, 2024 - HTML
Whole Exome Sequencing end-to-end pipeline. Starting from whole exome fastq files: Data QC, Adapter Trimming, Reference Genome Alignment, SAM/BAM Validation, Data Recalibration and Variant Calling.
-
Updated
Apr 2, 2022 - HTML
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
-
Updated
Mar 29, 2022 - R
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
-
Updated
Jan 17, 2024 - Shell
A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.
-
Updated
Sep 15, 2022 - Java
Improve this page
Add a description, image, and links to the trimmomatic topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the trimmomatic topic, visit your repo's landing page and select "manage topics."