snrna-seq
Here are 11 public repositories matching this topic...
An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.
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Jun 20, 2022 - Python
A tool for single cell genomics data processing and analysis
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Feb 20, 2024 - Shell
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
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May 3, 2024 - R
Spatial alignment of single cell transcriptomic data.
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Jun 12, 2024 - Jupyter Notebook
habenulaPilot project code repository
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Jul 11, 2024 - HTML
snRNA_seq portion of the spatialDLPFC project
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Aug 16, 2024 - HTML
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
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Sep 13, 2024 - R
A Snakemake workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
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Sep 13, 2024 - R
A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
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Oct 2, 2024 - R
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