Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
-
Updated
Jun 14, 2024 - Python
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
The Micro Remote Sensing course - provides a complete introduction to reproducible flight planning, acquisition, pre-processing, and exemplar analysis of high resolution low budget image data using commercial and open software systems.
REANA: Reusable research data analysis platform
A curated list of reproducible research case studies, projects, tutorials, and media
A template for projects using Nix to provision tools and enforce coding standards
Tutorial for working with machine learning algorithms in Python.
DaCy: The State of the Art Danish NLP pipeline using SpaCy
Live code in Pandoc Markdown
Popperized MLPerf benchmark workflows
How to use Jupyter notebooks and R markdown to create living documents and reproducible reports.
Exercise Staters and solutions for cd0581-building-a-reproducible-model-workflow by Giacomo Vianello
A docker image for running the server's integration tests in a reproducible manner
Python utility functions
Revistas de Economia com a nova classificação Qualis 2019: lista extraída a partir daquele PDF de quatrocentas páginas!
The accompanying R package for Rajeg's (2019) PhD thesis titled "Metaphorical profiles and near-synonyms: A corpus-based study of Indonesian words for Happiness"
Build a re-usable end-to-end pipeline for predicting short-term rental prices in NYC
Collective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:
Textbook that provides JavaScript and Python code to create open reproducible remote sensing analyses and workflows in Google Earth Engine.
Snakemake workflow for Salmon quantification and FastQC quality controls
Add a description, image, and links to the reproducible-workflows topic page so that developers can more easily learn about it.
To associate your repository with the reproducible-workflows topic, visit your repo's landing page and select "manage topics."