openslide
Here are 37 public repositories matching this topic...
Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
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Apr 25, 2020 - Jupyter Notebook
Full package for applying deep learning to virtual slides.
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Sep 7, 2018 - Python
Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
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Oct 8, 2023 - JavaScript
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
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Sep 25, 2023 - Python
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
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May 15, 2024 - Python
An ITK ImageIO module for the OpenSlide library.
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May 31, 2022 - C++
A pyqt5 widget for viewing whole-slide images with Openslide
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Feb 3, 2018 - Python
a toolbox for manipulation of digital pathology slides and annotations
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Aug 11, 2020 - Jupyter Notebook
Unofficial Go bindings for OpenSlide - I don't like Go, by the way.
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Aug 26, 2020 - Go
3D visualisation using Inviwo and OpenSlide
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Jul 29, 2021 - C++
Preprocessing module for large histological images
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Jun 16, 2023 - Python
LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)
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Jun 28, 2021 - JavaScript
A pyqt5 widget for viewing collection of whole-slide images with Openslide
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Feb 3, 2018 - Python
A pyqt5 GUI for CBIR in whole-slide images with Openslide
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Feb 3, 2018 - Python
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
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May 8, 2024 - C#
🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
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Nov 22, 2022 - Python
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