DU Intelligence Artificielle et Santé (CHU de Lille). Séminaire 4: Traitement de l'image.
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Updated
Apr 7, 2023 - Jupyter Notebook
DU Intelligence Artificielle et Santé (CHU de Lille). Séminaire 4: Traitement de l'image.
Axon and myelin segmentation of SEM images
Custom software to allow manual counting of neurons labeled by the pesudorabies (PRV) virus. This software was written for the Texas Biomedical Device Center at UT Dallas. Images must be converted from their native format to the Microsoft "DeepZoom" format. This software relies on Node Webkit and OpenSeadragon.
NIST OpenSeadragon filtering demo applied to a histology image
Train and apply a RandomForestClassifier on large images
Downloads images of histological samples in full quality from Leica's WebScope Flashapplet.
stain augmentation method based on stainmix up using multiple known stain matrices.
Human sinoatrial node computational anatomy repository.
A medical reference for practical reasons
ImageJ/Fiji macro that crops any given image stack without having to load it into memory first.
A Matlab program for calculating the mean relative error (MRE) under different numbers of view-fields (fieldN) and areas of view-field (fieldS).
Collection of Python scripts that analyze .png histological image
Code for the paper "Contrastive Pre-Training and Multiple Instance Learning for Predicting Tumor Microsatellite Instability" (EMBC 2024)
slideNormalize: normalisation of histological high-resolution images.
Package of ImageJ macros for quantification of cardiac histology.
A Nextflow wrapper for HistoQC
QuantifFasga is a plugin for ImageJ whose aim is to quantify the histology of plant sections coloured with Fasga staining and digitised with whole slide microscopy scanner.
An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.
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