BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
-
Updated
Jun 13, 2024 - Python
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
This repository contains all the files and related directions to implement in MATLAB environment the episodic memory model developed by Pirazzini and Ursino in “Modeling the contribution of theta-gamma coupling to sequential memory, imagination, and dreaming, Frontiers in Neural Circuits, 2024” (DOI: https://doi.org/10.3389/fncir.2024.1326609)
Full-scale biophysical model of the dentate gyrus
Full-scale biophysical model of the dentate gyrus
AICONSlab's hippocampal segmentation algorithm using CNNs
Hippocampal Segmentation Factory (HSF). A one-liner Deep Learning tool to segment raw T2w (and T1w) MRIs into hippocampal subfields in few seconds. Trained on 700+ manually segmented hippocampi.
A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.
This work showcases a variational graph autoencoder disentanglement using 3D mesh data.
Computational Cognitive Neuroscience, Fourth Edition
ScanHippoHealth: MRI segmentation using 3D-Unet on Medical Segmentation Decathlon data. Flask app with secure authentication, predicting and displaying six slices of input MRI alongside masks for precise hippocampus segmentation. Contributions welcome to enhance medical image analysis for better diagnostics.
State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
Python code to analyze data and create figures for the manuscript "Graded Remapping of Hippocampal Ensembles under Sensory Conflicts"
Python script & library to read hippocampal volumes computed by Freesurfer & ASHS
Code for my paper: "Theta sequences as eligibility traces: a biological solution to credit assignment"
An open-source package that offer fully-functional spike-based bio-inspired hippocampal memory models implemented with SNN technology in the SpiNNaker hardware in Python
A semi-latent state-space model that combines movement, LFP, and ensemble spiking information to identify periods of replay and decode its content in real time. Long Tao et al., unpublished.
Base code for NeuroIPS 2023 paper on NMDA activation function on transformers
SynapticVes-Py. Python code to support 3D quantitative analysis of presynaptic active zones in hippocampal mossy fiber boutons using electron tomograms and IMOD model output.
The LCN-HippoModel is a biophysically realistic model of CA1 pyramidal cells aimed to get novel insights on firing dynamics in deep and superficial populations during the theta rhythm.
Add a description, image, and links to the hippocampus topic page so that developers can more easily learn about it.
To associate your repository with the hippocampus topic, visit your repo's landing page and select "manage topics."