Julia module to perform haplotype allele-specific DNA methylation analysis.
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Updated
Jan 7, 2021 - Julia
Julia module to perform haplotype allele-specific DNA methylation analysis.
Code accompanying the findings in Duran-Ferrer 2020, Nat Cancer. The epiCMIT mitotic clock calculator and a Pan B-cell tumor classifier algorithm are provided.
Discover the under-methylated regions in population
Pipeline for BS-Seq data based on snakemake
Identifying PMDs using a non-parametric HMM
This is a R package that intends to perform all the features possible by tensor decomposition based unsupervised feature extraction
📦 🔬 R/methyvim: Targeted, Robust, and Model-free Differential Methylation Analysis
Test data for the mint methylation pipeline
Scripts used for the DNA methylation analysis section in the manuscript "Sports activities at a young age decrease hypertension risk – the J-Fit+ study"
Annotating epigenetic variation among samples with region sets in R
Lecture given in University of Pittsburgh course Genomics (BIOSC 1250) related to the epigenetic-basis for PTSD, how methylation of cytosines is detected and how epigenetic modifications of PTSD are hereditary.
Analysis of data from GEO
DNA Methylation-based Prediction of Midlife Dementia Risk
Matlab codes (red channel & green channel) for analyzing coffee ring porosity and detecting cancer
DNA methylation in the honey bee and some other Hymenopterans
Code to estimate Tumor Content end Phenotype Evidence score from samples sequenced with the NEMO panel
CUE: CpG impUtation Ensemble for DNA Methylation Levels Across the HumanMethylation450 (HM450) BeadChip and HumanMethylation EPIC (HM850) BeadChip Platforms
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