Computational Crystallography Toolbox
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Updated
Jun 3, 2024 - Python
Computational Crystallography Toolbox
This repository contains the 3D reconstruction code written for and used in the final project for Inverse Problems in Imaging tought by Mastermath at Utrecht University.
Helical Indexing using Layer Lines
Helical indexing using the cylindrical projection of a 3D density map
DiffModeler: a diffusion model based protein complex structure modeling tool.
Python library that enables scripting access to CryoSPARC, a cryo-EM software package.
CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The cryoSPARC platform enables automated, high quality and high-throughput structure discovery of proteins, viruses and molecular complexes for research and drug discovery.
Assignment solutions for the course CS754 Advanced Image Processing, Spring 2024 at IIT Bombay
Manipulate and mine Relion .star files
Simple GUI tool based on tkinter to enable coordinate transformation between TEM and LM images.
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
Image-processing software for cryo-electron microscopy
Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning
cryo-ET particle picking using triplet networks and metric learning
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
High Throughput Electron Microscopy Image Processing Software
DeepMuon is initially built for PandaX-4T III and TRIDENT-Hailing Plan. Up tp now it provides a easy-using platform for interdisciplinary deep-learning research.
Leveraging Structural Prior and Constraints for Cryo-EM Heterogeneous Reconstruction
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