Pre-trained models for the crisprScore package
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Updated
Nov 3, 2022 - R
Pre-trained models for the crisprScore package
⛓️ Automating construction of oligo library sequences for oligo array synthesis.
BWA-based alignment of CRISPR gRNA spacer sequences
Bowtie-based alignment of CRISPR gRNA spacer sequences
ALLEGRO: An Algorithm Leveraging Linear Programing to Enhance Guide RNA Optimization
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
Shiny interface for CRISPR gRNAs designed with the crisprVerse
Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+
Base functions and classes for CRISPR gRNA design
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
Useful human and mouse data for the crisprVerse ecosystem
Visualization of CRISPR guide RNAs (gRNAs)
CRISPR Guide RNA Designer
A guideRNA design tool for the modern era.
CRISPR, faster, better – The Crackling method for whole-genome target detection
Collection of R packages that work in harmony for CRISPR gRNA design
Tutorials for the crisprVerse
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
A gRNA database generation tool.
Comprehensive design of CRISPR gRNAs for nucleases and base editors
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