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Error while runing 'snamke -jall' for installing #15
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I have same problem , I run |
Excuse me. Could you help me solve the problem that command not found while running "snakemake -jall"? |
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z@z-System-Product-Name:~/Desktop/serpentine-env$ snakemake -jall
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 8
Rules claiming more threads will be scaled down.
Job stats:
job count min threads max threads
all 1 1 1
build 2 8 8
build_veins 1 8 8
build_veins_vlc 1 8 8
total 5 1 8
Select jobs to execute...
[Mon Dec 12 16:53:02 2022]
rule build:
input: lib/veins/src/libveins_dbg.so, lib/veins-vlc/src/libveins-vlc_dbg.so, src/Makefile
output: src/experiment_dbg
jobid: 1
reason: Missing output files: src/experiment_dbg
wildcards: dbg=_dbg
threads: 8
resources: tmpdir=/tmp
make: Entering directory '/home/z/Desktop/serpentine-env/src'
serpentine/GymConnection.cc
serpentine/GymSplitter.cc
In file included from ./serpentine/GymConnection.h:25:0,
from serpentine/GymConnection.cc:23:
../lib/zmq/src/zmq/zmq.hpp:70:10: fatal error: zmq.h: No such file or directory
#include <zmq.h>
^~~~~~~
compilation terminated.
Makefile:105: recipe for target 'out/gcc-debug//serpentine/GymConnection.o' failed
make: *** [out/gcc-debug//serpentine/GymConnection.o] Error 1
make: *** Waiting for unfinished jobs....
In file included from ./serpentine/GymConnection.h:25:0,
from serpentine/GymSplitter.h:22,
from serpentine/GymSplitter.cc:19:
../lib/zmq/src/zmq/zmq.hpp:70:10: fatal error: zmq.h: No such file or directory
#include <zmq.h>
^~~~~~~
compilation terminated.
Makefile:105: recipe for target 'out/gcc-debug//serpentine/GymSplitter.o' failed
make: *** [out/gcc-debug//serpentine/GymSplitter.o] Error 1
make: Leaving directory '/home/z/Desktop/serpentine-env/src'
[Mon Dec 12 16:53:02 2022]
Error in rule build:
jobid: 1
input: lib/veins/src/libveins_dbg.so, lib/veins-vlc/src/libveins-vlc_dbg.so, src/Makefile
output: src/experiment_dbg
shell:
make -j8 -C src MODE=debug
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2022-12-12T165301.797820.snakemake.log
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