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prep.cytonorm does not keep original cellular.cols columns #36

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gosh-squash opened this issue Aug 14, 2022 · 0 comments
Open

prep.cytonorm does not keep original cellular.cols columns #36

gosh-squash opened this issue Aug 14, 2022 · 0 comments

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@gosh-squash
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While following the Batch Alignment walk-through, found that prep.cytonorm function does not keep original cell marker columns (cellular.cols) even when specifying to keep both the original and coarse aligned columns ( cellular.cols = c(cellular.cols, paste0(cellular.cols, crs.append)) ).

I am clustering by the coarse aligned cell makers ( paste0(cellular.cols, crs.append) ), this impacts several down-stream commands which require the original column names (e.g. train.cytonorm & run.cytonorm)

Thanks in advance

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