paths.py

# The directory of brats2018 training dataset
brats2018_training_dir = '/media/pkao/Dataset/BraTS2018/training'
# The directory of brats2018 validation dataset
brats2018_validation_dir = '/media/pkao/Dataset/BraTS2018/validation'
# The directory of brats2018 testing dataset
brats2018_testing_dir = '/media/pkao/Dataset/BraTS2018/testing'

# The directory of the predicted lesions for training dataset
brats2018_training_predicted_lesions_dir = '/media/pkao/Dataset/BraTS2018_submission/predicted_lesions/ensemble_26_training_uint8'
# The directory of the predicted lesions for validation dataset
brats2018_validation_predicted_lesions_dir = '/media/pkao/Dataset/BraTS2018_submission/predicted_lesions/ensemble_26_validation_uint8'
# The directory of the predicted lesions for testing dataset
brats2018_testing_predicted_lesions_dir = '/media/pkao/Dataset/BraTS2018_submission/predicted_lesions/ensemble_26_testing_uint8'

# The directory of the MNI152 T1 1mm atlas
mni152_1mm_path = '/usr/share/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz'
# The directory of dsi studio
dsi_studio_path = '/home/pkao/dsistudio/dsi_studio_64'


# The directory of the HarvardOxford subcortical brain parcellation atlas
#harvard_oxford_sub_brain_parcellation_path = '/usr/share/fsl/data/atlases/HarvardOxford/HarvardOxford-sub-maxprob-thr0-1mm.nii.gz'