panda

#!/usr/bin/env bash
_VERSION='0.1.1'
_ME=$(basename "${0}")
BANNER=$(cat <<HEREDOC

metaRNA

Version: ${_VERSION}

Usage:
  ${_ME} <command> [--command-options] [<arguments>]
  ${_ME} -h | --help
  ${_ME} --version

Options:
  -h --help  Display this help information.
  --version  Display version information.

Help:
  ${_ME} help [<command>]

HEREDOC
)

source ./tools/pandalib.sh

VIENNA_RELEASE='https://github.com/ViennaRNA/ViennaRNA/releases/download/v2.3.5/ViennaRNA-2.3.5.tar.gz'
VIENNA_PREFIX=`pwd`/.build

__sigint () {
  printf '\n'
  _abort 'Cancelled'
}
trap __sigint SIGINT

#================================================
desc 'test:pytest' <<EOF
Usage:
  ${_ME} test:pytest

Description:
  Run Python unit tests.
EOF
test:pytest () {
  python setup.py test && rc=$? || rc=$?
  return $rc
}

#================================================
desc 'test:setup' <<EOF
Usage:
  ${_ME} test:setup

Description:
  Test Setup script validity.
EOF
test:setup () {
  python setup.py check && rc=$? || rc=$?
  return $rc
}

#================================================
desc 'test:all' <<HEREDOC
Usage:
  ${_ME} test:all

Description:
  Run all tests.
HEREDOC
test:all () {
  local steps=('test:pytest' 'test:setup')
  local _lenstep=${#steps[@]}
  local _failure=0
  for (( i = 0; i < $_lenstep; i++ )); do
    _info "[$(($i + 1)) / $_lenstep] Running ${steps[$i]}"
    ${steps[$i]} || _failure=$(($_failure + 1))
  done
  if [ $_failure -eq 0 ]; then
    _success 'All tests passing'
  else
    _abort "$_failure of $_lenstep tests failed"
  fi
}

#================================================
desc 'dev:install_vienna' <<HEREDOC
Usage:
  ${_ME} dev:install_vienna

Description:
  Install RNA Vienna Package.
HEREDOC
dev:install_vienna () {
  mkdir -p .build
  cd .build
  wget $VIENNA_RELEASE -O vienna.tar.gz
  mkdir vienna
  tar -zxf vienna.tar.gz -C vienna --strip-components=1
  cd vienna
  ./configure --without-perl \
              --without-python \
              --without-python3 \
              --prefix=${VIENNA_PREFIX} \
              --without-doc-pdf \
              --without-doc-html \
              --without-doc \
              --without-svm \
              --without-forester \
              --without-gsl \
              --without-json
  make
  make install
  cd ../..
}

#================================================
_main