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scrna-analysis-tutorials

In this repository, I explore various single cell genomics analysis and when to apply them using both Python and R.

Python

  1. Complete RNAseq workflow
  2. RNA Velocity

R

  1. single cell RNAseq clustering and labeling Code HTML
  2. single cell RNAseq + ATACseq integration Code HTML
  3. single cell ATACseq integration Code HTML
  4. Gene Set Enrichment Code HTML
  5. RNA Trajectory Analysis Code HTML
  6. RNA Velocity Analysis Code HTML