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TASK-2478#2239

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pfurio wants to merge 27 commits intorelease-2.2.xopencb/opencga:release-2.2.xfrom TASK-2478opencb/opencga:TASK-2478Copy head branch name to clipboard

+834-277

Commits

Commits on Jan 10, 2023

• analysis: properly count deletion overlap pairs, #TASK-2478

  pfurio

  committed
  cb9c9ef

Commits on Jan 11, 2023

• analysis: exclude missense variants for DEL_OVERLAP, #TASK-2478

  pfurio

  committed
  005ad36

Commits on Jan 18, 2023

• analysis: add cts to exclude, #TASK-2478

  pfurio

  committed
  47b509c

Commits on Jan 24, 2023

• analysis: calculate missing chPairVariantStats, #TASK-2478

  pfurio

  committed
  99a25da

Commits on Jan 25, 2023

• analysis: fix HOM_ALT filters with 2 pop freqs, #TASK-2478

  pfurio

  committed
  7aeddf7

Commits on Jan 26, 2023

• analysis: ensure RGA always have the same behaviour, #TASK-2478

  Show description for d0f5eee
  pfurio

  committed
  d0f5eee

• analysis: fix aux collection query parser, #TASK-2478

  pfurio

  committed
  528b490

Commits on Jan 27, 2023

• analysis: fix facet queries, #TASK-2478

  pfurio

  committed
  b15d641

Commits on Jan 30, 2023

• analysis: fix query parser options, #TASK-2478

  pfurio

  committed
  35ae29a

• analysis: fix ko filter, #TASK-2478

  pfurio

  committed
  269f1b0

Commits on Jan 31, 2023

• analysis: improve summary performance, #TASK-2478

  pfurio

  committed
  24381c4

• analysis: add cache for RGA, #TASK-1750

  pfurio

  committed
  2ffd484

• analysis: make map thread-safe, #TASK-1750

  pfurio

  committed
  0567f68

• analysis: remove static modifier, #TASK-1750

  pfurio

  committed
  21d1033

• analysis: cache only queries taking longer than 4 seconds, #TASK-1750

  pfurio

  committed
  cac9f02

• analysis: put if absent, #TASK-2478

  pfurio

  committed
  40d3c1d

Commits on Feb 2, 2023

• analysis: count CH variant stats properly, #TASK-2478

  pfurio

  committed
  38fcd58

Commits on Feb 3, 2023

• analysis: improve query parser with 2 pop freqs, #TASK-2478

  pfurio

  committed
  822d012

Commits on Feb 6, 2023

• analysis: store paired PFs to be able to filter, #TASK-2478

  pfurio

  committed
  054d763

• analysis: remove useless CH pair combinations, #TASK-2478

  pfurio

  committed
  dbab096

Commits on Mar 10, 2023

• analysis: fix queries with pop freq < 0.001

  pfurio

  committed
  09aaaff

Commits on Mar 20, 2023

• analysis: add collection suffix for RGA, #TASK-2478

  pfurio

  committed
  4527509

• analysis: check suffix is null, #TASK-2478

  pfurio

  committed
  cd68009

Commits on Mar 21, 2023

• storage: Fix trio serialization in CompoundHeterozygous variant query.

  j-coll

  committed
  7293adc

Commits on Mar 22, 2023

• analysis: remove limit to variant query, #TASK-2478

  pfurio

  committed
  37d809a

Commits on Apr 5, 2023

• analysis: reduce number of parallel tasks, #TASK-2478

  pfurio

  committed
  2d95ee2

• analysis: fix pop freq queries over CH variants, #TASK-2478

  pfurio

  committed
  1a3c9a8