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to_bigwig: wrong format for chromsizes #168
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sorry for the delay in addressing this-- if you have a minimal example onhand (e.g. defining a dataframe & chromsizes), that would be helpful! |
@rusch-emma -- just going through old issues now, if this is no longer an issue we can close! |
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Hi!
I ran into an issue today with the
to_bigwig
function and it turned out it was the way I provided chromsizes. The two issues were that chromsizes wasn't indexed by "chrom" and that I included a "name" column which I was used to from other open2c tools such as cooltools (termed "viewFrames", I think?) and which would cause the function to fail with error messages like invalid unsigned integer: "chr2L" which were not very clear to me.I think it would be helpful if (1) there were clearer error messages describing these mistakes and (2) more flexibility in the data formats provided and/or a more consistent data format to use such as viewFrames.
Thanks!
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