-
Notifications
You must be signed in to change notification settings - Fork 404
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Copy-Number Enhancements - Ascat penality #1510
Comments
This seems easy enough, I'm fairly sure we can add that for I split your initial issue in 2 different feature requests |
Description of feature
Hi there.
I think Sarek is in a good place with the current ASCAT implementation, but I'd like to point towards two things that I think would be helpful for the community.
ascat.aspcf()
(found in the ascat module) accepts a parameterpenalty
which controls the sensitivity of the tool to potential segment breakpoints. The default is 70 which is usually fine, but for individuals using panel/wes data being able to change this value might be helpful - any chance of exposing this as aparam
?Kind regards,
George
EDIT by @maxulysse - created #1512
The text was updated successfully, but these errors were encountered: