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Workflow execution completed unsuccessfully!The exit status of the task that caused the workflow execution to fail was: 1.The full error message was:Error executing process > 'NFCORE_SAREK:SAREK:PREPARE_GENOME:BWAMEM2_INDEX (wheat_AK58v4MP.genome_part.fa)'Caused by: Process `NFCORE_SAREK:SAREK:PREPARE_GENOME:BWAMEM2_INDEX (wheat_AK58v4MP.genome_part.fa)` terminated with an error exit status (1)Command executed: mkdir bwamem2 bwa-mem2 \ index \ \ wheat_AK58v4MP.genome_part.fa -p bwamem2/wheat_AK58v4MP.genome_part.fa cat <<-END_VERSIONS > versions.yml "NFCORE_SAREK:SAREK:PREPARE_GENOME:BWAMEM2_INDEX": bwamem2: $(echo $(bwa-mem2 version 2>&1) | sed 's/.* //') END_VERSIONSCommand exit status: 1Command output: (empty)Command error: WARNING: Skipping mount /var/apptainer/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container Looking to launch executable "/usr/local/bin/bwa-mem2.avx512bw", simd = .avx512bw Launching executable "/usr/local/bin/bwa-mem2.avx512bw" [bwa_index] Pack FASTA... 326.78 sec * Entering FMI_search init ticks = 2314687594798 ref seq len = 29505445308 binary seq ticks = 1439253015648 Allocation of 219.83 GB for suffix_array failed. Current Allocation = 247.31 GBWork dir: /cluster/home/fanrong/projects/AK58/input/work/15/67742430e3c44550423e1622438e63Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out
Description of the bug
Command used and terminal output
Relevant files
XXX@node6 67742430e3c44550423e1622438e63]$ cat .command.sh
#!/bin/bash -euo pipefail
mkdir bwamem2
bwa-mem2
index
wheat_AK58v4MP.genome_part.fa -p bwamem2/wheat_AK58v4MP.genome_part.fa
cat <<-END_VERSIONS > versions.yml$(echo $ (bwa-mem2 version 2>&1) | sed 's/.* //')
"NFCORE_SAREK:SAREK:PREPARE_GENOME:BWAMEM2_INDEX":
bwamem2:
END_VERSIONS
System information
No response
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