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[Errno 2] No such file or directory: -> tmp_core_diversity.txt #58
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I have the same problem. |
A common problem that can cause an empty core genome is a too diverse set of strains/species. Try the option to use a relaxed soft core to get some genes into the core genome. |
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Hello everyone,
I am trying to run pan-genome analysis on 32 AOA species using the full genebanks I obtained from the NCBI and this code
./panX.py -fn data/genebanks -sl pratice -t 6
However I ran into this error on Step 6
IOError: [Errno 2] No such file or directory: ./pan-genome-analysis/data/input_GenBank/protein_faa/diamond_matches/tmp_core/tmp_core_diversity.txt'
Does anyone any ideas how to over come this please and thank you. I should note that the TestSet worked without any problems.
Thank you very much
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