Fwdpp 0.3.9

This release fixes two bugs, issues #26 and #27. Any users using the library to simulate scaled mutation rates >= 250 may want to re-run simulations. Results were very slightly incorrect.

A new unit test was added to check the API and correctness of taking samples from populations.

fwdpp 0.3.8

This is a minor release:

• Added some include directives whose omission resulted in failure to compile on clang.
• Doxygen input file now generated by ./configure. No more need to manually update the version.

fwdpp 0.3.7

This is primarily a developer-oriented release, introducing:

• namespace KTfwd::extensions, which contains some useful things for using fwdpp in R (via Rcpp) or Python (via Cython and/or boost.python)
• Rearrange the guts of sampling from the population to make sampling a fixed set of diploids easier.

fwdpp 0.3.6

This release has two changes:

• The lookup tables used internally have been further refined. The result is big speedups for simulations with selection. We've seen run-time speeds improved by as little as 20% and by as much as 20x, depending on the specifics of what is being simulated.
• KTfwd::site_dependent_fitness has been modified to address a bug that would allow fitness to be < 0. No simulation results are affected by this bug because the GNU Scientific Library would have exited with an error when constructing lookup tables with fitnesses < 0, and hence the simulation would not have finished.

The DOI for this release is http://dx.doi.org/10.5281/zenodo.24173 (it took Zenodo a really long time to get that up...)

fwdpp 0.3.5

This release includes:

• Faster simulation under selection due to an improved lookup table used internally
• Issue #21 addressed, which is a reorganization of the library source code for easier navigation
• Issue #23 addressed, which involves the inclusion of a "one-stop" header for including "sugar" features.

The DOI for this release is: http://dx.doi.org/10.5281/zenodo.21417

minor bug fix

This release does the following:

• Address issue #19 re: documentation
• Fix issue #20, which was a minor bug that could lead to rare segmentation faults. Please that the fix means that simulation results will occasionally be different.
• Update the copying/license files to contain the full GPLv2 text. fwdpp is still licensed as GPL >= v2.

The DOI for this release is http://dx.doi.org/10.5281/zenodo.20057

massive performance improvements

This release drastically improves the run-time performance of simulations by:

• streamlining how recombination is performed
• replacing expensive linear searches after recombination with log-time searches
• minimizing the creation/allocation of containers used to store the intermediates of recombination events.

The DOI for this release is http://dx.doi.org/10.5281/zenodo.19620