From 63cc24f9f1cdf4f8eac753fb12b925b345ff65dd Mon Sep 17 00:00:00 2001 From: Fabrice Normandin Date: Fri, 20 Dec 2024 08:32:47 -0800 Subject: [PATCH] Switch from Poetry to UV (#137) * Switch from Poetry to UV Signed-off-by: Fabrice Normandin * Fix pre-commit issues, get removesuffix from `str` Signed-off-by: Fabrice Normandin * Remove poetry.lock Signed-off-by: Fabrice Normandin * Add missing uv.lock file Signed-off-by: Fabrice Normandin * Add missing pytest-skip-slow test dependency Signed-off-by: Fabrice Normandin * Fix issue in testing.yml reusable workflow Signed-off-by: Fabrice Normandin * Update codecov action (?) Getting inconsistent errors in CI, maybe due to a codecov issue? - Example: https://github.com/mila-iqia/milatools/actions/runs/12419445408/job/34676165915?pr=137 - Issue on the CodeCov action repo: https://github.com/codecov/codecov-action/issues/1580 Signed-off-by: Fabrice Normandin --------- Signed-off-by: Fabrice Normandin --- .github/workflows/build.yml | 49 +- .github/workflows/testing.yml | 20 +- .pre-commit-config.yaml | 6 - milatools/cli/code.py | 2 +- milatools/cli/utils.py | 12 - milatools/utils/parallel_progress.py | 2 +- milatools/utils/vscode_utils.py | 2 +- poetry.lock | 1619 ------------------------- pyproject.toml | 78 +- tests/cli/common.py | 4 +- tests/integration/test_code.py | 5 +- tests/utils/test_compute_node.py | 6 +- tests/utils/test_parallel_progress.py | 3 +- uv.lock | 804 ++++++++++++ 14 files changed, 885 insertions(+), 1727 deletions(-) delete mode 100644 poetry.lock create mode 100644 uv.lock diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 47c64b98..55df961b 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -42,23 +42,18 @@ jobs: PLATFORM: ${{ matrix.platform }} steps: - uses: actions/checkout@v4 - - name: Install poetry (not on MacOS) - if: runner.os != 'macOS' - run: pip install poetry - - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v3 with: - python-version: ${{ matrix.python-version }} - cache: ${{ matrix.platform != 'macos-latest' && 'poetry' || '' }} - - - name: Install poetry (only on MacOS) - if: runner.os == 'macOS' - run: pip install poetry - + version: "latest" + enable-cache: true + # https://github.com/astral-sh/setup-uv?tab=readme-ov-file#github-authentication-token + github-token: ${{ secrets.GITHUB_TOKEN }} + cache-suffix: ${{ matrix.python-version }} + - name: Pin Python version to ${{ matrix.python-version }} + run: uv python pin ${{ matrix.python-version }} - name: Install dependencies - run: poetry install --with=dev - + run: uv sync - name: Setup passwordless SSH access to localhost for tests # Adapted from https://stackoverflow.com/a/60367309/6388696 if: runner.os == 'Linux' @@ -75,7 +70,7 @@ jobs: ssh -o 'StrictHostKeyChecking no' localhost id - name: Test with pytest - run: poetry run pytest --cov=milatools --cov-report=xml --cov-append + run: uv run pytest --cov=milatools --cov-report=xml --cov-append - name: Store coverage report as an artifact uses: actions/upload-artifact@v4 @@ -130,19 +125,21 @@ jobs: chmod og-rw ~ ssh -o 'StrictHostKeyChecking no' localhost id - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v3 with: - python-version: ${{ matrix.python-version }} - + version: "latest" + enable-cache: true + # https://github.com/astral-sh/setup-uv?tab=readme-ov-file#github-authentication-token + github-token: ${{ secrets.GITHUB_TOKEN }} + cache-suffix: ${{ matrix.python-version }} + - name: Pin Python version to ${{ matrix.python-version }} + run: uv python pin ${{ matrix.python-version }} - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install poetry - poetry install --with=dev + run: uv sync - name: Launch integration tests - run: poetry run pytest --slow --cov=milatools --cov-report=xml --cov-append -vvv --log-level=DEBUG + run: uv run pytest --slow --cov=milatools --cov-report=xml --cov-append -vvv --log-level=DEBUG timeout-minutes: 15 env: SLURM_CLUSTER: localhost @@ -188,7 +185,7 @@ jobs: # Next step if this doesn't work would be to give the coverage files a unique name and use merge-multiple: true path: coverage_reports - name: Upload coverage reports to Codecov - uses: codecov/codecov-action@v4 + uses: codecov/codecov-action@v5 with: token: ${{ secrets.CODECOV_TOKEN }} # file: ./coverage.xml # Search for all coverage files from each workflow. diff --git a/.github/workflows/testing.yml b/.github/workflows/testing.yml index 4da4de68..7ee21c9a 100644 --- a/.github/workflows/testing.yml +++ b/.github/workflows/testing.yml @@ -32,20 +32,22 @@ jobs: ssh -O check -oStrictHostKeyChecking=no ${{ inputs.cluster }} - uses: actions/checkout@v4 - - name: Set up Python ${{ inputs.python-version }} - uses: actions/setup-python@v5 + - name: Install the latest version of uv + uses: astral-sh/setup-uv@v3 with: - python-version: ${{ inputs.python-version }} - + version: "latest" + enable-cache: true + # https://github.com/astral-sh/setup-uv?tab=readme-ov-file#github-authentication-token + github-token: ${{ secrets.GITHUB_TOKEN }} + cache-suffix: ${{ inputs.python-version }} + - name: Pin Python version to ${{ inputs.python-version }} + run: uv python pin ${{ inputs.python-version }} - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install poetry - poetry install --with=dev + run: uv sync - name: Launch integration tests id: self_hosted_integration_tests - run: poetry run pytest --slow --cov=milatools --cov-report=xml --cov-append -vvv --log-level=DEBUG + run: uv run pytest --slow --cov=milatools --cov-report=xml --cov-append -vvv --log-level=DEBUG timeout-minutes: ${{ inputs.timeout-minutes }} env: SLURM_CLUSTER: ${{ inputs.cluster }} diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 5ba5dbef..70df6523 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -28,12 +28,6 @@ repos: - id: check-added-large-files require_serial: true - - repo: https://github.com/python-poetry/poetry - rev: 1.7.0 - hooks: - - id: poetry-check - require_serial: true - - repo: https://github.com/charliermarsh/ruff-pre-commit # Ruff version. rev: v0.1.14 diff --git a/milatools/cli/code.py b/milatools/cli/code.py index 47615d3e..c0c4752d 100644 --- a/milatools/cli/code.py +++ b/milatools/cli/code.py @@ -2,9 +2,9 @@ import asyncio import shutil +from collections.abc import Awaitable from logging import getLogger as get_logger from pathlib import PurePosixPath -from typing import Awaitable from milatools.cli import console from milatools.cli.init_command import DRAC_CLUSTERS diff --git a/milatools/cli/utils.py b/milatools/cli/utils.py index 20c7c432..30fc7a80 100644 --- a/milatools/cli/utils.py +++ b/milatools/cli/utils.py @@ -367,18 +367,6 @@ def stripped_lines_of(text: str) -> list[str]: return [line.strip() for line in text.splitlines()] -if sys.version_info < (3, 9): - - def removesuffix(s: str, suffix: str) -> str: - """Backport of `str.removesuffix` for Python<3.9.""" - if s.endswith(suffix): - return s[: -len(suffix)] - else: - return s -else: - removesuffix = str.removesuffix - - class AllocationFlagsAction(argparse._StoreAction): def __call__( self, diff --git a/milatools/utils/parallel_progress.py b/milatools/utils/parallel_progress.py index aff12597..cfc82808 100644 --- a/milatools/utils/parallel_progress.py +++ b/milatools/utils/parallel_progress.py @@ -2,9 +2,9 @@ import asyncio import functools +from collections.abc import Coroutine from logging import getLogger as get_logger from typing import ( - Coroutine, Protocol, TypedDict, TypeVar, diff --git a/milatools/utils/vscode_utils.py b/milatools/utils/vscode_utils.py index c63380cc..cb80bca5 100644 --- a/milatools/utils/vscode_utils.py +++ b/milatools/utils/vscode_utils.py @@ -7,9 +7,9 @@ import subprocess import sys import textwrap +from collections.abc import Sequence from logging import getLogger as get_logger from pathlib import Path -from typing import Sequence from milatools.cli.utils import ( CommandNotFoundError, diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 7ed0162d..00000000 --- a/poetry.lock +++ /dev/null @@ -1,1619 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - 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"poetry_dynamic_versioning.backend" +requires = ["hatchling", "uv-dynamic-versioning"] +build-backend = "hatchling.build" diff --git a/tests/cli/common.py b/tests/cli/common.py index 39e7de88..332e8deb 100644 --- a/tests/cli/common.py +++ b/tests/cli/common.py @@ -17,7 +17,7 @@ from pytest_regressions.file_regression import FileRegressionFixture from typing_extensions import ParamSpec -from milatools.cli.utils import SSH_CACHE_DIR, SSH_CONFIG_FILE, removesuffix +from milatools.cli.utils import SSH_CACHE_DIR, SSH_CONFIG_FILE from milatools.utils.remote_v2 import RemoteV2, get_controlpath_for if typing.TYPE_CHECKING: @@ -208,4 +208,4 @@ def _lambda_to_str(lambda_: Callable) -> str: # lambda x: x + 1, # ] # a trailing comma is returned by `inspect.getsource`, which we want to remove. - return removesuffix(lambda_body, ",") + return lambda_body.removesuffix(",") diff --git a/tests/integration/test_code.py b/tests/integration/test_code.py index 64ce63c5..1ca58ded 100644 --- a/tests/integration/test_code.py +++ b/tests/integration/test_code.py @@ -20,7 +20,6 @@ CommandNotFoundError, MilatoolsUserError, get_hostname_to_use_for_compute_node, - removesuffix, ) from milatools.utils import disk_quota from milatools.utils.compute_node import ( @@ -324,7 +323,7 @@ async def test_code_with_existing_job( hostname = existing_job.hostname # We actually need to pass `cn-a001` (node name) as --node, not the entire # hostname! - node = removesuffix(hostname, ".server.mila.quebec") + node = hostname.removesuffix(".server.mila.quebec") if not use_v1: @@ -368,7 +367,7 @@ def _mock_close(): hostname = existing_job.hostname # We actually need to pass `cn-a001` (node name) as --node, not the entire # hostname! - node = removesuffix(hostname, ".server.mila.quebec") + node = hostname.removesuffix(".server.mila.quebec") code_v1( path=path, diff --git a/tests/utils/test_compute_node.py b/tests/utils/test_compute_node.py index 5623b737..f45e58b3 100644 --- a/tests/utils/test_compute_node.py +++ b/tests/utils/test_compute_node.py @@ -13,7 +13,6 @@ import pytest_asyncio import milatools.cli.utils -from milatools.cli.utils import removesuffix from milatools.utils.compute_node import ( ComputeNode, JobNotRunningError, @@ -260,10 +259,7 @@ async def test_connect_with_node_name(self, runner: ComputeNode): # squeue expects the node name, so we have to truncate it manually for now. login_node = runner.login_node node_hostname = runner.hostname - if node_hostname.endswith(".server.mila.quebec"): - node_name = removesuffix(node_hostname, ".server.mila.quebec") - else: - node_name = node_hostname + node_name = node_hostname.removesuffix(".server.mila.quebec") # Connect with the node name: compute_node_with_node_name = await ComputeNode.connect( diff --git a/tests/utils/test_parallel_progress.py b/tests/utils/test_parallel_progress.py index 78138de7..45a8e1d6 100644 --- a/tests/utils/test_parallel_progress.py +++ 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