From 5f69ad20282a795564cde23272267622dc99593f Mon Sep 17 00:00:00 2001 From: Anguraj Sadanandam Date: Sat, 9 Apr 2022 14:57:40 +0100 Subject: [PATCH] Update README.md --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index a3255e2..059af43 100644 --- a/README.md +++ b/README.md @@ -78,6 +78,7 @@ For brevity, below lists only the first author of multi-omics methods. - 2020 - [MEFISTO](https://biofam.github.io/MOFA2/MEFISTO.html) - Velten - spatial or temporal relationships - [preprint](https://doi.org/10.1101/2020.11.03.366674) - 2020 - [MultiPower](https://github.com/ConesaLab/MultiPower) - Tarazona - Sample size in multi-omic experiments - [paper](https://doi.org/10.1038/s41467-020-16937-8) - 2020 - [mixedCCA](https://cran.r-project.org/web/packages/mixedCCA/) - Yoon - Sparse semiparametric CCA for data of mixed types - [paper](https://doi.org/10.1093/biomet/asaa007) +- 2020 - [PhenMap] (https://github.com/syspremed/PhenMAP/) - Nyamundanda and Sadanandam et al., A Machine-Learning Tool Concurrently Models Single Omics and Phenome Data for Functional Subtyping and Personalized Cancer Medicine - [paper] (https://doi.org/10.3390/cancers12102811) ### Ecology multi-table literature @@ -110,6 +111,8 @@ For brevity, below lists only the first author of multi-omics methods. - 2019 - [IBOOST](http://dlin.web.unc.edu/software/iboost/) - Wong - [paper](https://doi.org/10.1186/s13059-019-1640-4) - 2019 - [Spectrum](https://cran.r-project.org/web/packages/Spectrum/index.html) - John - [paper](https://doi.org/10.1093/bioinformatics/btz704) - 2020 - [INF](https://gitlab.fbk.eu/MPBA/INF) - Chierici and Bussola - [paper](https://doi.org/10.1101/2020.04.01.020685) +- 2020 - [PhenMap] (https://github.com/syspremed/PhenMAP/) - Nyamundanda and Sadanandam et al., A Machine-Learning Tool Concurrently Models Single Omics and Phenome Data for Functional Subtyping and Personalized Cancer Medicine - [paper] (https://doi.org/10.3390/cancers12102811) + ### Multi-omics autoencoders - 2019 - [maui](https://github.com/BIMSBbioinfo/maui) - Ronen - Stacked VAE + clustering predictive of survival - [paper](https://doi.org/10.26508/lsa.201900517)